miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24131 5' -56.1 NC_005263.2 + 19783 0.66 0.652376
Target:  5'- aCGGGCUcg-GCGGCCgaccagauUCGcGCCGCGa -3'
miRNA:   3'- -GCUUGGuuaUGCCGGac------AGC-CGGCGU- -5'
24131 5' -56.1 NC_005263.2 + 26709 0.66 0.652376
Target:  5'- cCGAGCaggc-CGGCCUG-CGGCagCGCGa -3'
miRNA:   3'- -GCUUGguuauGCCGGACaGCCG--GCGU- -5'
24131 5' -56.1 NC_005263.2 + 20140 0.66 0.652376
Target:  5'- gCGA--CGGUACGGCC-GUCGcGCCGg- -3'
miRNA:   3'- -GCUugGUUAUGCCGGaCAGC-CGGCgu -5'
24131 5' -56.1 NC_005263.2 + 10380 0.66 0.652376
Target:  5'- uGAGCCGccACGcGCCggGcCGGCCgGCGa -3'
miRNA:   3'- gCUUGGUuaUGC-CGGa-CaGCCGG-CGU- -5'
24131 5' -56.1 NC_005263.2 + 4532 0.66 0.641342
Target:  5'- --uACCGacGUGCGGCgCUGUgccgaCGGCgGCAu -3'
miRNA:   3'- gcuUGGU--UAUGCCG-GACA-----GCCGgCGU- -5'
24131 5' -56.1 NC_005263.2 + 3951 0.66 0.641342
Target:  5'- aCGcGCCAGccaGCGaGCCUGgcaGGCCGUu -3'
miRNA:   3'- -GCuUGGUUa--UGC-CGGACag-CCGGCGu -5'
24131 5' -56.1 NC_005263.2 + 25362 0.66 0.641342
Target:  5'- gCGuuCCucgGCGGCCUGaUCGGUgCGCu -3'
miRNA:   3'- -GCuuGGuuaUGCCGGAC-AGCCG-GCGu -5'
24131 5' -56.1 NC_005263.2 + 20627 0.66 0.641342
Target:  5'- aGAACgAAgucaaGGCCg--UGGCCGCAg -3'
miRNA:   3'- gCUUGgUUaug--CCGGacaGCCGGCGU- -5'
24131 5' -56.1 NC_005263.2 + 25886 0.66 0.630299
Target:  5'- cCGGGCCGAcgcCGGCga--CGGCCGCGa -3'
miRNA:   3'- -GCUUGGUUau-GCCGgacaGCCGGCGU- -5'
24131 5' -56.1 NC_005263.2 + 30939 0.66 0.619257
Target:  5'- gCGAGCUgcgcauuCGGCUUcUCGGCCGUg -3'
miRNA:   3'- -GCUUGGuuau---GCCGGAcAGCCGGCGu -5'
24131 5' -56.1 NC_005263.2 + 27681 0.66 0.619257
Target:  5'- aCGGccGCCuucuuGUGCGcGCCggcgccggCGGCCGCAu -3'
miRNA:   3'- -GCU--UGGu----UAUGC-CGGaca-----GCCGGCGU- -5'
24131 5' -56.1 NC_005263.2 + 19033 0.66 0.608227
Target:  5'- gCGAcgGCCGAUGCGcGCCgccccgagGaCGcGCCGCGc -3'
miRNA:   3'- -GCU--UGGUUAUGC-CGGa-------CaGC-CGGCGU- -5'
24131 5' -56.1 NC_005263.2 + 25076 0.67 0.597218
Target:  5'- uGAA-CGGUGCGGCCgagauaGUCGGucauaCCGCGa -3'
miRNA:   3'- gCUUgGUUAUGCCGGa-----CAGCC-----GGCGU- -5'
24131 5' -56.1 NC_005263.2 + 27872 0.67 0.597218
Target:  5'- gGAAUCAGUGgauaaGGCCgg-CGGCgCGCAg -3'
miRNA:   3'- gCUUGGUUAUg----CCGGacaGCCG-GCGU- -5'
24131 5' -56.1 NC_005263.2 + 17583 0.67 0.597218
Target:  5'- aCGAACgGcgGCGGCCaa--GGCgCGCAg -3'
miRNA:   3'- -GCUUGgUuaUGCCGGacagCCG-GCGU- -5'
24131 5' -56.1 NC_005263.2 + 36715 0.67 0.597218
Target:  5'- cCGAACCAcGUGCGcGCa----GGCCGCGa -3'
miRNA:   3'- -GCUUGGU-UAUGC-CGgacagCCGGCGU- -5'
24131 5' -56.1 NC_005263.2 + 6618 0.67 0.586239
Target:  5'- uGGAUCAcgACGGCCgacUCGcCCGCGu -3'
miRNA:   3'- gCUUGGUuaUGCCGGac-AGCcGGCGU- -5'
24131 5' -56.1 NC_005263.2 + 24086 0.67 0.575298
Target:  5'- -cGACCGAUcCGGCCgg-CGGCgGCu -3'
miRNA:   3'- gcUUGGUUAuGCCGGacaGCCGgCGu -5'
24131 5' -56.1 NC_005263.2 + 5570 0.67 0.575298
Target:  5'- -aGACCGuucagcucgauuGUGCGGCC-GUCGGgcauCCGCAc -3'
miRNA:   3'- gcUUGGU------------UAUGCCGGaCAGCC----GGCGU- -5'
24131 5' -56.1 NC_005263.2 + 23109 0.67 0.564404
Target:  5'- cCGcAGCCAuacccgguUGCGGCCagGcCGGCCaGCAu -3'
miRNA:   3'- -GC-UUGGUu-------AUGCCGGa-CaGCCGG-CGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.