Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio #
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P value |
| Predicted miRNA align pattern | |||||||
| 24132 | 3' | -54.9 | NC_005263.2 | + | 41624 | 0.66 | 0.694179 |
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Target: 5'- uCGUcGaCUGC-CUGGUugCACUGCGGCCc -3' miRNA: 3'- -GCGaCaGACGuGGCUA--GUGACGCUGG- -5' |
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| 24132 | 3' | -54.9 | NC_005263.2 | + | 41266 | 0.66 | 0.683219 |
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Target: 5'- uCGCcgGUCgUGuCGCCG-UCGCUGCGcuuCCc -3' miRNA: 3'- -GCGa-CAG-AC-GUGGCuAGUGACGCu--GG- -5' |
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| 24132 | 3' | -54.9 | NC_005263.2 | + | 25252 | 0.66 | 0.683219 |
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Target: 5'- gGCuUGUaCgcaGCACCGAUCAgCUGCauGCCg -3' miRNA: 3'- gCG-ACA-Ga--CGUGGCUAGU-GACGc-UGG- -5' |
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| 24132 | 3' | -54.9 | NC_005263.2 | + | 26976 | 0.66 | 0.715904 |
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Target: 5'- uGCaGUCcugcGCGCCGAgcagcaccCGCUGCG-CCg -3' miRNA: 3'- gCGaCAGa---CGUGGCUa-------GUGACGCuGG- -5' |
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| 24132 | 3' | -54.9 | NC_005263.2 | + | 16488 | 0.66 | 0.694179 |
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Target: 5'- gGCg--CUGCGCCGcgCGgcCgucGCGACCg -3' miRNA: 3'- gCGacaGACGUGGCuaGU--Ga--CGCUGG- -5' |
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| 24132 | 3' | -54.9 | NC_005263.2 | + | 15379 | 0.66 | 0.678821 |
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Target: 5'- aCGCUGUCggguagcgacccgGcCGCCGugcaugCGCUcGUGACCg -3' miRNA: 3'- -GCGACAGa------------C-GUGGCua----GUGA-CGCUGG- -5' |
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| 24132 | 3' | -54.9 | NC_005263.2 | + | 32670 | 0.66 | 0.715904 |
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Target: 5'- gCGCUGcCUcGCGCCGuacCugUaCGGCCg -3' miRNA: 3'- -GCGACaGA-CGUGGCua-GugAcGCUGG- -5' |
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| 24132 | 3' | -54.9 | NC_005263.2 | + | 16949 | 0.66 | 0.726647 |
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Target: 5'- aCGa--UCUGCGCCGA-CACgcaagGCGuACCg -3' miRNA: 3'- -GCgacAGACGUGGCUaGUGa----CGC-UGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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