miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24132 3' -54.9 NC_005263.2 + 20741 0.69 0.540028
Target:  5'- cCGCcG-CcGCGCCGcUCGCUgGCGGCCu -3'
miRNA:   3'- -GCGaCaGaCGUGGCuAGUGA-CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 20962 0.68 0.561717
Target:  5'- gCGCUGUCggacauCGCCGAcgCGgCUGCGcGCCu -3'
miRNA:   3'- -GCGACAGac----GUGGCUa-GU-GACGC-UGG- -5'
24132 3' -54.9 NC_005263.2 + 21960 0.72 0.354522
Target:  5'- gCGCUGUUUGCGCaguuGAUCGCcaacGuCGACCc -3'
miRNA:   3'- -GCGACAGACGUGg---CUAGUGa---C-GCUGG- -5'
24132 3' -54.9 NC_005263.2 + 22827 0.67 0.661162
Target:  5'- aCGCUGUCgcgcGCGCgGAUCGgcaUGCaGCUg -3'
miRNA:   3'- -GCGACAGa---CGUGgCUAGUg--ACGcUGG- -5'
24132 3' -54.9 NC_005263.2 + 25062 0.72 0.34607
Target:  5'- uGCUGUaCUGCuuCUGAaCGgUGCGGCCg -3'
miRNA:   3'- gCGACA-GACGu-GGCUaGUgACGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 25252 0.66 0.683219
Target:  5'- gGCuUGUaCgcaGCACCGAUCAgCUGCauGCCg -3'
miRNA:   3'- gCG-ACA-Ga--CGUGGCUAGU-GACGc-UGG- -5'
24132 3' -54.9 NC_005263.2 + 26976 0.66 0.715904
Target:  5'- uGCaGUCcugcGCGCCGAgcagcaccCGCUGCG-CCg -3'
miRNA:   3'- gCGaCAGa---CGUGGCUa-------GUGACGCuGG- -5'
24132 3' -54.9 NC_005263.2 + 27426 0.69 0.508054
Target:  5'- uGCUGUCgcgucGCGCuCGGcaaaCACUGCGAgCCc -3'
miRNA:   3'- gCGACAGa----CGUG-GCUa---GUGACGCU-GG- -5'
24132 3' -54.9 NC_005263.2 + 27737 0.67 0.638994
Target:  5'- aCGgUGUCgGCGCgCGAUCAgccaUGCGcGCCc -3'
miRNA:   3'- -GCgACAGaCGUG-GCUAGUg---ACGC-UGG- -5'
24132 3' -54.9 NC_005263.2 + 28144 0.7 0.476909
Target:  5'- aCGCUGcCaGCGCCGAgCAC-GCGAgCa -3'
miRNA:   3'- -GCGACaGaCGUGGCUaGUGaCGCUgG- -5'
24132 3' -54.9 NC_005263.2 + 28216 0.67 0.620129
Target:  5'- aGCUGUugguggcCUGCAUCGGccgcgcucgccgcgcUCGCcGUGACCu -3'
miRNA:   3'- gCGACA-------GACGUGGCU---------------AGUGaCGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 30364 0.66 0.715904
Target:  5'- gCGCUGcCgccgGCGCCGAgugCGagccccaUGCGGCg -3'
miRNA:   3'- -GCGACaGa---CGUGGCUa--GUg------ACGCUGg -5'
24132 3' -54.9 NC_005263.2 + 30935 0.69 0.497573
Target:  5'- gCGCUucgcaaucGUCUGCcaGCCGAaCACcGCGACg -3'
miRNA:   3'- -GCGA--------CAGACG--UGGCUaGUGaCGCUGg -5'
24132 3' -54.9 NC_005263.2 + 32395 0.67 0.650086
Target:  5'- gCGCUgGUCgaaccGC-CCGuaGUCGCUGCGAgCu -3'
miRNA:   3'- -GCGA-CAGa----CGuGGC--UAGUGACGCUgG- -5'
24132 3' -54.9 NC_005263.2 + 32562 0.67 0.638994
Target:  5'- gCGC-GUCUGCGCCGAgauugauaaauUCAUcGaCGAUCu -3'
miRNA:   3'- -GCGaCAGACGUGGCU-----------AGUGaC-GCUGG- -5'
24132 3' -54.9 NC_005263.2 + 32670 0.66 0.715904
Target:  5'- gCGCUGcCUcGCGCCGuacCugUaCGGCCg -3'
miRNA:   3'- -GCGACaGA-CGUGGCua-GugAcGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 32746 0.69 0.540028
Target:  5'- gCGCUGccgcUUGCGCgGcgCAaUGCGACCg -3'
miRNA:   3'- -GCGACa---GACGUGgCuaGUgACGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 33979 0.79 0.137358
Target:  5'- gCGCUGgccgCUGCGgcuaCGAUCGCgacgGCGACCg -3'
miRNA:   3'- -GCGACa---GACGUg---GCUAGUGa---CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 37398 0.67 0.67221
Target:  5'- gGCUGcgCgacgUGCAUCGcGUCGC-GCGGCCg -3'
miRNA:   3'- gCGACa-G----ACGUGGC-UAGUGaCGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 37453 0.7 0.465727
Target:  5'- gCGCgGUCUGCGCgGcGUCcauguguACUGCGGCg -3'
miRNA:   3'- -GCGaCAGACGUGgC-UAG-------UGACGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.