Results 41 - 48 of 48 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
|
R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 24132 | 3' | -54.9 | NC_005263.2 | + | 39853 | 1.13 | 0.00054 |
|
Target: 5'- uCGCUGUCUGCACCGAUCACUGCGACCa -3' miRNA: 3'- -GCGACAGACGUGGCUAGUGACGCUGG- -5' |
|||||||
| 24132 | 3' | -54.9 | NC_005263.2 | + | 41266 | 0.66 | 0.683219 |
|
Target: 5'- uCGCcgGUCgUGuCGCCG-UCGCUGCGcuuCCc -3' miRNA: 3'- -GCGa-CAG-AC-GUGGCuAGUGACGCu--GG- -5' |
|||||||
| 24132 | 3' | -54.9 | NC_005263.2 | + | 41624 | 0.66 | 0.694179 |
|
Target: 5'- uCGUcGaCUGC-CUGGUugCACUGCGGCCc -3' miRNA: 3'- -GCGaCaGACGuGGCUA--GUGACGCUGG- -5' |
|||||||
| 24132 | 3' | -54.9 | NC_005263.2 | + | 42847 | 0.68 | 0.594662 |
|
Target: 5'- cCGCUGcCgGCACCGccCGCUGaUGACg -3' miRNA: 3'- -GCGACaGaCGUGGCuaGUGAC-GCUGg -5' |
|||||||
| 24132 | 3' | -54.9 | NC_005263.2 | + | 44633 | 0.67 | 0.661162 |
|
Target: 5'- uCGCUG-CgGCAgCUGAUCgaGCUGCG-CCu -3' miRNA: 3'- -GCGACaGaCGU-GGCUAG--UGACGCuGG- -5' |
|||||||
| 24132 | 3' | -54.9 | NC_005263.2 | + | 44856 | 0.69 | 0.518628 |
|
Target: 5'- aCGcCUGUCUGCGCggCGAUCGC-GCcuACCu -3' miRNA: 3'- -GC-GACAGACGUG--GCUAGUGaCGc-UGG- -5' |
|||||||
| 24132 | 3' | -54.9 | NC_005263.2 | + | 47263 | 0.68 | 0.594662 |
|
Target: 5'- aCGCUGUCcGCGCuCGGUagugACgUGCGcGCCg -3' miRNA: 3'- -GCGACAGaCGUG-GCUAg---UG-ACGC-UGG- -5' |
|||||||
| 24132 | 3' | -54.9 | NC_005263.2 | + | 47498 | 0.68 | 0.583637 |
|
Target: 5'- cCGCUGUCggGCACUGccuacGUUACUGaUGGCg -3' miRNA: 3'- -GCGACAGa-CGUGGC-----UAGUGAC-GCUGg -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home