Results 41 - 48 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24132 | 3' | -54.9 | NC_005263.2 | + | 11497 | 0.67 | 0.615692 |
Target: 5'- gCGCcGUCgccuuguUGCACUGGUCGCgcGCGAUg -3' miRNA: 3'- -GCGaCAG-------ACGUGGCUAGUGa-CGCUGg -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 10677 | 0.67 | 0.661162 |
Target: 5'- gGCccagGUCgGCauaGCCGAcCACUucGCGACCg -3' miRNA: 3'- gCGa---CAGaCG---UGGCUaGUGA--CGCUGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 9698 | 0.66 | 0.715904 |
Target: 5'- gCGCuuUGcCUGC-UCGAcCGCUGCGGCg -3' miRNA: 3'- -GCG--ACaGACGuGGCUaGUGACGCUGg -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 6229 | 0.72 | 0.34607 |
Target: 5'- aGCgga-UGC-CCGAUCGCUcGCGGCCa -3' miRNA: 3'- gCGacagACGuGGCUAGUGA-CGCUGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 3341 | 0.68 | 0.594662 |
Target: 5'- gCGCcGcCgGCGCCGcgCGCggucgaGCGACCa -3' miRNA: 3'- -GCGaCaGaCGUGGCuaGUGa-----CGCUGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 2799 | 0.67 | 0.638994 |
Target: 5'- gGCUGgUCgagugccaugaGCACCGAguauUCGCaaaGCGACCa -3' miRNA: 3'- gCGAC-AGa----------CGUGGCU----AGUGa--CGCUGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 2679 | 0.67 | 0.650086 |
Target: 5'- gCGUUGUg-GUAgCUGAUCGC-GCGGCCg -3' miRNA: 3'- -GCGACAgaCGU-GGCUAGUGaCGCUGG- -5' |
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24132 | 3' | -54.9 | NC_005263.2 | + | 1925 | 0.66 | 0.726647 |
Target: 5'- gCGC-GUCUGCacgagcgcGCCGG-CACcgGCGACg -3' miRNA: 3'- -GCGaCAGACG--------UGGCUaGUGa-CGCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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