miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24132 3' -54.9 NC_005263.2 + 39853 1.13 0.00054
Target:  5'- uCGCUGUCUGCACCGAUCACUGCGACCa -3'
miRNA:   3'- -GCGACAGACGUGGCUAGUGACGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 33979 0.79 0.137358
Target:  5'- gCGCUGgccgCUGCGgcuaCGAUCGCgacgGCGACCg -3'
miRNA:   3'- -GCGACa---GACGUg---GCUAGUGa---CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 20339 0.73 0.337762
Target:  5'- cCGCUGUCgGCACCGAUac---CGGCCu -3'
miRNA:   3'- -GCGACAGaCGUGGCUAgugacGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 6229 0.72 0.34607
Target:  5'- aGCgga-UGC-CCGAUCGCUcGCGGCCa -3'
miRNA:   3'- gCGacagACGuGGCUAGUGA-CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 25062 0.72 0.34607
Target:  5'- uGCUGUaCUGCuuCUGAaCGgUGCGGCCg -3'
miRNA:   3'- gCGACA-GACGu-GGCUaGUgACGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 21960 0.72 0.354522
Target:  5'- gCGCUGUUUGCGCaguuGAUCGCcaacGuCGACCc -3'
miRNA:   3'- -GCGACAGACGUGg---CUAGUGa---C-GCUGG- -5'
24132 3' -54.9 NC_005263.2 + 17386 0.72 0.379848
Target:  5'- aGCUGUCUGCcggcgcgGCCGcgCGCcugGCGGgCg -3'
miRNA:   3'- gCGACAGACG-------UGGCuaGUGa--CGCUgG- -5'
24132 3' -54.9 NC_005263.2 + 12519 0.71 0.427227
Target:  5'- gGCaGUUUGCGcCCGGUCAgauuCUGaCGGCCg -3'
miRNA:   3'- gCGaCAGACGU-GGCUAGU----GAC-GCUGG- -5'
24132 3' -54.9 NC_005263.2 + 11932 0.7 0.45668
Target:  5'- aGCguugaagGUC-GCACCGGUCGC-GCaGGCCg -3'
miRNA:   3'- gCGa------CAGaCGUGGCUAGUGaCG-CUGG- -5'
24132 3' -54.9 NC_005263.2 + 37453 0.7 0.465727
Target:  5'- gCGCgGUCUGCGCgGcGUCcauguguACUGCGGCg -3'
miRNA:   3'- -GCGaCAGACGUGgC-UAG-------UGACGCUGg -5'
24132 3' -54.9 NC_005263.2 + 28144 0.7 0.476909
Target:  5'- aCGCUGcCaGCGCCGAgCAC-GCGAgCa -3'
miRNA:   3'- -GCGACaGaCGUGGCUaGUGaCGCUgG- -5'
24132 3' -54.9 NC_005263.2 + 30935 0.69 0.497573
Target:  5'- gCGCUucgcaaucGUCUGCcaGCCGAaCACcGCGACg -3'
miRNA:   3'- -GCGA--------CAGACG--UGGCUaGUGaCGCUGg -5'
24132 3' -54.9 NC_005263.2 + 27426 0.69 0.508054
Target:  5'- uGCUGUCgcgucGCGCuCGGcaaaCACUGCGAgCCc -3'
miRNA:   3'- gCGACAGa----CGUG-GCUa---GUGACGCU-GG- -5'
24132 3' -54.9 NC_005263.2 + 44856 0.69 0.518628
Target:  5'- aCGcCUGUCUGCGCggCGAUCGC-GCcuACCu -3'
miRNA:   3'- -GC-GACAGACGUG--GCUAGUGaCGc-UGG- -5'
24132 3' -54.9 NC_005263.2 + 12562 0.69 0.529288
Target:  5'- uGCUgcGUUUGCgaacgugcuGCCGAUCGCcgGCGGCa -3'
miRNA:   3'- gCGA--CAGACG---------UGGCUAGUGa-CGCUGg -5'
24132 3' -54.9 NC_005263.2 + 20741 0.69 0.540028
Target:  5'- cCGCcG-CcGCGCCGcUCGCUgGCGGCCu -3'
miRNA:   3'- -GCGaCaGaCGUGGCuAGUGA-CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 32746 0.69 0.540028
Target:  5'- gCGCUGccgcUUGCGCgGcgCAaUGCGACCg -3'
miRNA:   3'- -GCGACa---GACGUGgCuaGUgACGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 14095 0.68 0.561717
Target:  5'- gGCUGguaccggCUGCGCggCGGUCGCcgucGCGAUCg -3'
miRNA:   3'- gCGACa------GACGUG--GCUAGUGa---CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 20962 0.68 0.561717
Target:  5'- gCGCUGUCggacauCGCCGAcgCGgCUGCGcGCCu -3'
miRNA:   3'- -GCGACAGac----GUGGCUa-GU-GACGC-UGG- -5'
24132 3' -54.9 NC_005263.2 + 47498 0.68 0.583637
Target:  5'- cCGCUGUCggGCACUGccuacGUUACUGaUGGCg -3'
miRNA:   3'- -GCGACAGa-CGUGGC-----UAGUGAC-GCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.