miRNA display CGI


Results 21 - 40 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24132 3' -54.9 NC_005263.2 + 32562 0.67 0.638994
Target:  5'- gCGC-GUCUGCGCCGAgauugauaaauUCAUcGaCGAUCu -3'
miRNA:   3'- -GCGaCAGACGUGGCU-----------AGUGaC-GCUGG- -5'
24132 3' -54.9 NC_005263.2 + 2799 0.67 0.638994
Target:  5'- gGCUGgUCgagugccaugaGCACCGAguauUCGCaaaGCGACCa -3'
miRNA:   3'- gCGAC-AGa----------CGUGGCU----AGUGa--CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 28216 0.67 0.620129
Target:  5'- aGCUGUugguggcCUGCAUCGGccgcgcucgccgcgcUCGCcGUGACCu -3'
miRNA:   3'- gCGACA-------GACGUGGCU---------------AGUGaCGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 11497 0.67 0.615692
Target:  5'- gCGCcGUCgccuuguUGCACUGGUCGCgcGCGAUg -3'
miRNA:   3'- -GCGaCAG-------ACGUGGCUAGUGa-CGCUGg -5'
24132 3' -54.9 NC_005263.2 + 15632 0.68 0.594662
Target:  5'- uCGCUGaaUGCGCCGA-CGCcgaucuacGCGAUCg -3'
miRNA:   3'- -GCGACagACGUGGCUaGUGa-------CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 42847 0.68 0.594662
Target:  5'- cCGCUGcCgGCACCGccCGCUGaUGACg -3'
miRNA:   3'- -GCGACaGaCGUGGCuaGUGAC-GCUGg -5'
24132 3' -54.9 NC_005263.2 + 47263 0.68 0.594662
Target:  5'- aCGCUGUCcGCGCuCGGUagugACgUGCGcGCCg -3'
miRNA:   3'- -GCGACAGaCGUG-GCUAg---UG-ACGC-UGG- -5'
24132 3' -54.9 NC_005263.2 + 3341 0.68 0.594662
Target:  5'- gCGCcGcCgGCGCCGcgCGCggucgaGCGACCa -3'
miRNA:   3'- -GCGaCaGaCGUGGCuaGUGa-----CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 47498 0.68 0.583637
Target:  5'- cCGCUGUCggGCACUGccuacGUUACUGaUGGCg -3'
miRNA:   3'- -GCGACAGa-CGUGGC-----UAGUGAC-GCUGg -5'
24132 3' -54.9 NC_005263.2 + 14095 0.68 0.561717
Target:  5'- gGCUGguaccggCUGCGCggCGGUCGCcgucGCGAUCg -3'
miRNA:   3'- gCGACa------GACGUG--GCUAGUGa---CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 20962 0.68 0.561717
Target:  5'- gCGCUGUCggacauCGCCGAcgCGgCUGCGcGCCu -3'
miRNA:   3'- -GCGACAGac----GUGGCUa-GU-GACGC-UGG- -5'
24132 3' -54.9 NC_005263.2 + 20741 0.69 0.540028
Target:  5'- cCGCcG-CcGCGCCGcUCGCUgGCGGCCu -3'
miRNA:   3'- -GCGaCaGaCGUGGCuAGUGA-CGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 32746 0.69 0.540028
Target:  5'- gCGCUGccgcUUGCGCgGcgCAaUGCGACCg -3'
miRNA:   3'- -GCGACa---GACGUGgCuaGUgACGCUGG- -5'
24132 3' -54.9 NC_005263.2 + 12562 0.69 0.529288
Target:  5'- uGCUgcGUUUGCgaacgugcuGCCGAUCGCcgGCGGCa -3'
miRNA:   3'- gCGA--CAGACG---------UGGCUAGUGa-CGCUGg -5'
24132 3' -54.9 NC_005263.2 + 44856 0.69 0.518628
Target:  5'- aCGcCUGUCUGCGCggCGAUCGC-GCcuACCu -3'
miRNA:   3'- -GC-GACAGACGUG--GCUAGUGaCGc-UGG- -5'
24132 3' -54.9 NC_005263.2 + 27426 0.69 0.508054
Target:  5'- uGCUGUCgcgucGCGCuCGGcaaaCACUGCGAgCCc -3'
miRNA:   3'- gCGACAGa----CGUG-GCUa---GUGACGCU-GG- -5'
24132 3' -54.9 NC_005263.2 + 30935 0.69 0.497573
Target:  5'- gCGCUucgcaaucGUCUGCcaGCCGAaCACcGCGACg -3'
miRNA:   3'- -GCGA--------CAGACG--UGGCUaGUGaCGCUGg -5'
24132 3' -54.9 NC_005263.2 + 28144 0.7 0.476909
Target:  5'- aCGCUGcCaGCGCCGAgCAC-GCGAgCa -3'
miRNA:   3'- -GCGACaGaCGUGGCUaGUGaCGCUgG- -5'
24132 3' -54.9 NC_005263.2 + 37453 0.7 0.465727
Target:  5'- gCGCgGUCUGCGCgGcGUCcauguguACUGCGGCg -3'
miRNA:   3'- -GCGaCAGACGUGgC-UAG-------UGACGCUGg -5'
24132 3' -54.9 NC_005263.2 + 11932 0.7 0.45668
Target:  5'- aGCguugaagGUC-GCACCGGUCGC-GCaGGCCg -3'
miRNA:   3'- gCGa------CAGaCGUGGCUAGUGaCG-CUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.