miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24132 5' -60 NC_005263.2 + 6617 0.66 0.482654
Target:  5'- cGGcGGcgCGCuCGGCgcgGUCGAGcagucGCGcGUCGg -3'
miRNA:   3'- -CC-CCa-GCG-GCCGa--CAGCUU-----CGC-CAGC- -5'
24132 5' -60 NC_005263.2 + 22490 0.66 0.472858
Target:  5'- --uGUCGCCGGCggcgGcCGGcGGCGGuUCGg -3'
miRNA:   3'- cccCAGCGGCCGa---CaGCU-UCGCC-AGC- -5'
24132 5' -60 NC_005263.2 + 17122 0.66 0.453573
Target:  5'- -uGG-CGuCCGGcCUGggguuccucggCGAAGCGGUCGa -3'
miRNA:   3'- ccCCaGC-GGCC-GACa----------GCUUCGCCAGC- -5'
24132 5' -60 NC_005263.2 + 40898 0.67 0.434723
Target:  5'- -uGGUCGCCGGCgaugGUCGcGGacuCGGUa- -3'
miRNA:   3'- ccCCAGCGGCCGa---CAGCuUC---GCCAgc -5'
24132 5' -60 NC_005263.2 + 17101 0.67 0.434723
Target:  5'- cGGG-CGCCcGCgUGUUGAucGUGGUCGa -3'
miRNA:   3'- cCCCaGCGGcCG-ACAGCUu-CGCCAGC- -5'
24132 5' -60 NC_005263.2 + 35887 0.67 0.434723
Target:  5'- ---uUCGCCGcGUugaUGUCGguGCGGUCGa -3'
miRNA:   3'- ccccAGCGGC-CG---ACAGCuuCGCCAGC- -5'
24132 5' -60 NC_005263.2 + 22222 0.67 0.389664
Target:  5'- cGGccGUCGCCGGC-GUCGGccCGGUUGc -3'
miRNA:   3'- cCC--CAGCGGCCGaCAGCUucGCCAGC- -5'
24132 5' -60 NC_005263.2 + 22786 0.68 0.381026
Target:  5'- aGGcUCGUgaacaUGG-UGUCGAAGCGGUCGu -3'
miRNA:   3'- cCCcAGCG-----GCCgACAGCUUCGCCAGC- -5'
24132 5' -60 NC_005263.2 + 14094 0.68 0.364137
Target:  5'- cGGcuGGUa-CCGGCUG-CGcGGCGGUCGc -3'
miRNA:   3'- -CC--CCAgcGGCCGACaGCuUCGCCAGC- -5'
24132 5' -60 NC_005263.2 + 5843 0.69 0.324228
Target:  5'- --uGUUGUCGGCcGUCGu-GCGGUCGa -3'
miRNA:   3'- cccCAGCGGCCGaCAGCuuCGCCAGC- -5'
24132 5' -60 NC_005263.2 + 17001 0.69 0.30189
Target:  5'- ----cCGCCGGgUGUCGAAGCGuUCGu -3'
miRNA:   3'- ccccaGCGGCCgACAGCUUCGCcAGC- -5'
24132 5' -60 NC_005263.2 + 19315 0.7 0.267331
Target:  5'- cGGccCGCCGGCUGU-GcGGUGGUCGa -3'
miRNA:   3'- cCCcaGCGGCCGACAgCuUCGCCAGC- -5'
24132 5' -60 NC_005263.2 + 43087 0.7 0.260815
Target:  5'- -----gGCCGGCUGUCGAGcGCGG-CGg -3'
miRNA:   3'- ccccagCGGCCGACAGCUU-CGCCaGC- -5'
24132 5' -60 NC_005263.2 + 32672 0.75 0.125964
Target:  5'- cGGGUCGgCGGCgaUGUCGAcgugcgucAGCaGGUCGg -3'
miRNA:   3'- cCCCAGCgGCCG--ACAGCU--------UCG-CCAGC- -5'
24132 5' -60 NC_005263.2 + 35703 0.77 0.083602
Target:  5'- uGGGGUCuGCCGGCcggcaagGUCGAAGaCGG-CGa -3'
miRNA:   3'- -CCCCAG-CGGCCGa------CAGCUUC-GCCaGC- -5'
24132 5' -60 NC_005263.2 + 39890 1.1 0.000304
Target:  5'- cGGGGUCGCCGGCUGUCGAAGCGGUCGu -3'
miRNA:   3'- -CCCCAGCGGCCGACAGCUUCGCCAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.