miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24133 5' -60.4 NC_005263.2 + 37912 0.66 0.410361
Target:  5'- -cGAGGCCGgCGAggcuucggccuGCUCGcgauucgcgcucUCGGCGAc -3'
miRNA:   3'- acUUCCGGCgGCU-----------CGAGC------------AGCCGCUu -5'
24133 5' -60.4 NC_005263.2 + 20438 0.66 0.401243
Target:  5'- aGAAGGCgGCCGuGCUUGcCGccgcCGAGa -3'
miRNA:   3'- aCUUCCGgCGGCuCGAGCaGCc---GCUU- -5'
24133 5' -60.4 NC_005263.2 + 39345 0.66 0.392256
Target:  5'- -cGGGGCUggcaGCCGAuucGCUCGgCGGCGGc -3'
miRNA:   3'- acUUCCGG----CGGCU---CGAGCaGCCGCUu -5'
24133 5' -60.4 NC_005263.2 + 27709 0.66 0.3834
Target:  5'- cGgcGGCCGCauaGGCUUGcUCGGuCGAGg -3'
miRNA:   3'- aCuuCCGGCGgc-UCGAGC-AGCC-GCUU- -5'
24133 5' -60.4 NC_005263.2 + 8747 0.66 0.366092
Target:  5'- aGAAGcgcgccGCCGCCGAGCgaaUCGGCu-- -3'
miRNA:   3'- aCUUC------CGGCGGCUCGagcAGCCGcuu -5'
24133 5' -60.4 NC_005263.2 + 3632 0.67 0.34933
Target:  5'- aGGuAGGCCauuucguaGUCGAGCUgCGcuUCGGCGAAc -3'
miRNA:   3'- aCU-UCCGG--------CGGCUCGA-GC--AGCCGCUU- -5'
24133 5' -60.4 NC_005263.2 + 5591 0.67 0.341156
Target:  5'- ---cGGCCGUCGGGCaUCcgcaCGGCGAGg -3'
miRNA:   3'- acuuCCGGCGGCUCG-AGca--GCCGCUU- -5'
24133 5' -60.4 NC_005263.2 + 17659 0.67 0.333122
Target:  5'- cGAAGGCCGCCGcGCUCacgcugcUCGcGCu-- -3'
miRNA:   3'- aCUUCCGGCGGCuCGAGc------AGC-CGcuu -5'
24133 5' -60.4 NC_005263.2 + 8275 0.67 0.333122
Target:  5'- cGGAcGGCCacaGCgCGAGCggCGUCGGuCGGAu -3'
miRNA:   3'- aCUU-CCGG---CG-GCUCGa-GCAGCC-GCUU- -5'
24133 5' -60.4 NC_005263.2 + 30216 0.67 0.325227
Target:  5'- cGgcGcGCCGCCGGucgacugaucGUUCG-CGGCGAAg -3'
miRNA:   3'- aCuuC-CGGCGGCU----------CGAGCaGCCGCUU- -5'
24133 5' -60.4 NC_005263.2 + 29504 0.68 0.302382
Target:  5'- cGAAcGCCGCUGcGGCgucCGUCGGCGc- -3'
miRNA:   3'- aCUUcCGGCGGC-UCGa--GCAGCCGCuu -5'
24133 5' -60.4 NC_005263.2 + 41324 0.68 0.297964
Target:  5'- cGAAGGgCggcgacuucgacgagGCCGAGCUCGccCGGCGc- -3'
miRNA:   3'- aCUUCCgG---------------CGGCUCGAGCa-GCCGCuu -5'
24133 5' -60.4 NC_005263.2 + 20735 0.68 0.295047
Target:  5'- cGccGGCCGCCGccgcgccGCUCGcUGGCGGc -3'
miRNA:   3'- aCuuCCGGCGGCu------CGAGCaGCCGCUu -5'
24133 5' -60.4 NC_005263.2 + 26034 0.68 0.295047
Target:  5'- cGAGcuGGCgGuuGAGCUCGUCGaGCu-- -3'
miRNA:   3'- aCUU--CCGgCggCUCGAGCAGC-CGcuu -5'
24133 5' -60.4 NC_005263.2 + 33959 0.68 0.287851
Target:  5'- cUGcGGGCCGgCGAGUgUG-CGGCGAAu -3'
miRNA:   3'- -ACuUCCGGCgGCUCGaGCaGCCGCUU- -5'
24133 5' -60.4 NC_005263.2 + 27362 0.68 0.273875
Target:  5'- --cAGGCCGCCagcGAGCggCG-CGGCGGc -3'
miRNA:   3'- acuUCCGGCGG---CUCGa-GCaGCCGCUu -5'
24133 5' -60.4 NC_005263.2 + 3432 0.68 0.273875
Target:  5'- gGAuGGCCGCCGAcUUCuUCGGCGc- -3'
miRNA:   3'- aCUuCCGGCGGCUcGAGcAGCCGCuu -5'
24133 5' -60.4 NC_005263.2 + 17723 0.69 0.267093
Target:  5'- cGAGcGCCGCCGcauggGGCUCGcacUCGGCGc- -3'
miRNA:   3'- aCUUcCGGCGGC-----UCGAGC---AGCCGCuu -5'
24133 5' -60.4 NC_005263.2 + 16578 0.69 0.256525
Target:  5'- -cAAGGCCggcggcgacgcguucGCCGGGCUCG-CGcGCGAGc -3'
miRNA:   3'- acUUCCGG---------------CGGCUCGAGCaGC-CGCUU- -5'
24133 5' -60.4 NC_005263.2 + 27548 0.69 0.235208
Target:  5'- cGGcAGGCCGggcaCGAGCgUCG-CGGCGAGg -3'
miRNA:   3'- aCU-UCCGGCg---GCUCG-AGCaGCCGCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.