miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24134 3' -49.8 NC_005263.2 + 18756 0.66 0.950887
Target:  5'- gCGCGAuCGUAggCGGcgcgGugCUCGCGCuGGu -3'
miRNA:   3'- -GUGUU-GCAUaaGUC----UugGAGCGCG-CC- -5'
24134 3' -49.8 NC_005263.2 + 30597 0.66 0.946143
Target:  5'- gUACAGCGcgaUCAGAucauCCUCGgGCa- -3'
miRNA:   3'- -GUGUUGCauaAGUCUu---GGAGCgCGcc -5'
24134 3' -49.8 NC_005263.2 + 27959 0.66 0.946143
Target:  5'- gACGGCGcggAUggccCAGAGCUgcugCGCGCGa -3'
miRNA:   3'- gUGUUGCa--UAa---GUCUUGGa---GCGCGCc -5'
24134 3' -49.8 NC_005263.2 + 25326 0.66 0.946143
Target:  5'- gACAcCaUGUUCAcGAGCCUCGgGCaGGu -3'
miRNA:   3'- gUGUuGcAUAAGU-CUUGGAGCgCG-CC- -5'
24134 3' -49.8 NC_005263.2 + 14222 0.66 0.946143
Target:  5'- gACAugGUuacgccuuGUUCAGGauAUCUCGUGUGa -3'
miRNA:   3'- gUGUugCA--------UAAGUCU--UGGAGCGCGCc -5'
24134 3' -49.8 NC_005263.2 + 12486 0.66 0.945653
Target:  5'- gGCGGCGcgcauugCGGcauccugcgcgccGGCUUCGCGCGGg -3'
miRNA:   3'- gUGUUGCauaa---GUC-------------UUGGAGCGCGCC- -5'
24134 3' -49.8 NC_005263.2 + 37606 0.66 0.945653
Target:  5'- gCACAACGUGcgcUUCgacggcaAGcACCU-GCGCGGc -3'
miRNA:   3'- -GUGUUGCAU---AAG-------UCuUGGAgCGCGCC- -5'
24134 3' -49.8 NC_005263.2 + 30810 0.66 0.941107
Target:  5'- gGCGACGUGcUCGGcggacagguaGACCUUGUGacCGGg -3'
miRNA:   3'- gUGUUGCAUaAGUC----------UUGGAGCGC--GCC- -5'
24134 3' -49.8 NC_005263.2 + 39072 0.66 0.941107
Target:  5'- gACGuCGUAgcCGGcucGCCgUCGCGCGGc -3'
miRNA:   3'- gUGUuGCAUaaGUCu--UGG-AGCGCGCC- -5'
24134 3' -49.8 NC_005263.2 + 33752 0.66 0.935776
Target:  5'- cCACGugGUGacCGGAAUCccgauagaacgUCGUGCGGc -3'
miRNA:   3'- -GUGUugCAUaaGUCUUGG-----------AGCGCGCC- -5'
24134 3' -49.8 NC_005263.2 + 9804 0.66 0.930148
Target:  5'- uCGCcGCGUGcggCAuAGCCuUCGUGCGGa -3'
miRNA:   3'- -GUGuUGCAUaa-GUcUUGG-AGCGCGCC- -5'
24134 3' -49.8 NC_005263.2 + 29295 0.66 0.930148
Target:  5'- gCACGGCGgccgggUCGGcAugCgcaucgCGCGCGGc -3'
miRNA:   3'- -GUGUUGCaua---AGUC-UugGa-----GCGCGCC- -5'
24134 3' -49.8 NC_005263.2 + 24461 0.67 0.924222
Target:  5'- gACGACGacGUUCGGGuucguGCCgccguucaUCGUGCGGa -3'
miRNA:   3'- gUGUUGCa-UAAGUCU-----UGG--------AGCGCGCC- -5'
24134 3' -49.8 NC_005263.2 + 18455 0.67 0.917998
Target:  5'- cCGCAACGgugugucGUUCA--ACCUCGC-CGGc -3'
miRNA:   3'- -GUGUUGCa------UAAGUcuUGGAGCGcGCC- -5'
24134 3' -49.8 NC_005263.2 + 10868 0.67 0.917998
Target:  5'- uCGCGGCGgaacUCGGcACCggCGCGCGu -3'
miRNA:   3'- -GUGUUGCaua-AGUCuUGGa-GCGCGCc -5'
24134 3' -49.8 NC_005263.2 + 14561 0.67 0.908785
Target:  5'- aCACGGCGgcauguuugcguUUCAGAucggcaauuGCCU-GCGCGGu -3'
miRNA:   3'- -GUGUUGCau----------AAGUCU---------UGGAgCGCGCC- -5'
24134 3' -49.8 NC_005263.2 + 11791 0.67 0.904659
Target:  5'- uCGCAugGcg--CAGGACgUCGCGUGu -3'
miRNA:   3'- -GUGUugCauaaGUCUUGgAGCGCGCc -5'
24134 3' -49.8 NC_005263.2 + 16588 0.67 0.904659
Target:  5'- gGCGACGcGUUCGccGGGCUcgCGCGCGa -3'
miRNA:   3'- gUGUUGCaUAAGU--CUUGGa-GCGCGCc -5'
24134 3' -49.8 NC_005263.2 + 32736 0.68 0.890154
Target:  5'- uGCAACGUAcgCGcuGCCgcUUGCGCGGc -3'
miRNA:   3'- gUGUUGCAUaaGUcuUGG--AGCGCGCC- -5'
24134 3' -49.8 NC_005263.2 + 41114 0.68 0.890154
Target:  5'- aACGACGUcaUCGccGAACUUCGcCGCGa -3'
miRNA:   3'- gUGUUGCAuaAGU--CUUGGAGC-GCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.