miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24134 5' -50.3 NC_005263.2 + 37967 0.66 0.927164
Target:  5'- aUGCCGCGCcggcuGGCGcUGAAggUGg--CGg -3'
miRNA:   3'- -ACGGCGCG-----UCGCaAUUUuuGCagaGC- -5'
24134 5' -50.3 NC_005263.2 + 37840 0.66 0.927164
Target:  5'- cGCCGaCGCGGCGUUucgcGAAccGCGUg-CGc -3'
miRNA:   3'- aCGGC-GCGUCGCAAu---UUU--UGCAgaGC- -5'
24134 5' -50.3 NC_005263.2 + 10488 0.66 0.927164
Target:  5'- cGCCGCGCAG-GUgcuugcCGUCgaagCGc -3'
miRNA:   3'- aCGGCGCGUCgCAauuuuuGCAGa---GC- -5'
24134 5' -50.3 NC_005263.2 + 25290 0.66 0.924751
Target:  5'- cGCgCGCGaCAGCGUgaucuuucCGUCgUCGg -3'
miRNA:   3'- aCG-GCGC-GUCGCAauuuuu--GCAG-AGC- -5'
24134 5' -50.3 NC_005263.2 + 29190 0.66 0.92104
Target:  5'- gUGCCGCGCGGUc------ACG-CUCGa -3'
miRNA:   3'- -ACGGCGCGUCGcaauuuuUGCaGAGC- -5'
24134 5' -50.3 NC_005263.2 + 42065 0.66 0.92104
Target:  5'- cGCCGCcaacgaacGgGGCGUgcucgcgGAAAGCGaCUCGu -3'
miRNA:   3'- aCGGCG--------CgUCGCAa------UUUUUGCaGAGC- -5'
24134 5' -50.3 NC_005263.2 + 37398 0.66 0.92104
Target:  5'- gGCUGCGCGaCGUgcAucGCGUCgcgCGg -3'
miRNA:   3'- aCGGCGCGUcGCAauUuuUGCAGa--GC- -5'
24134 5' -50.3 NC_005263.2 + 27235 0.66 0.92104
Target:  5'- cUGCCacugGCGCAGCGccguugcGACG-CUCGc -3'
miRNA:   3'- -ACGG----CGCGUCGCaauuu--UUGCaGAGC- -5'
24134 5' -50.3 NC_005263.2 + 41322 0.66 0.92104
Target:  5'- cGCCGCccgcCGGCGUcaccGAuuACGaUCUCGa -3'
miRNA:   3'- aCGGCGc---GUCGCAa---UUuuUGC-AGAGC- -5'
24134 5' -50.3 NC_005263.2 + 9027 0.66 0.914613
Target:  5'- gUGCCGCGCGaCGgcGAGccggcuacGACGUCcgCGu -3'
miRNA:   3'- -ACGGCGCGUcGCaaUUU--------UUGCAGa-GC- -5'
24134 5' -50.3 NC_005263.2 + 14690 0.66 0.907886
Target:  5'- cGCgCGCGCGGCGcucAAGGCGa-UCGa -3'
miRNA:   3'- aCG-GCGCGUCGCaauUUUUGCagAGC- -5'
24134 5' -50.3 NC_005263.2 + 30798 0.66 0.900861
Target:  5'- cUGCUGCuCGGCGgc---GACGUgCUCGg -3'
miRNA:   3'- -ACGGCGcGUCGCaauuuUUGCA-GAGC- -5'
24134 5' -50.3 NC_005263.2 + 10722 0.66 0.900861
Target:  5'- cGUCGCGCAGCcagGGcGACGcagaCUCGa -3'
miRNA:   3'- aCGGCGCGUCGcaaUUuUUGCa---GAGC- -5'
24134 5' -50.3 NC_005263.2 + 32531 0.66 0.893542
Target:  5'- gGCCGCGCuaccgucauucGGCGUUcagcgcgcGCGUCUgCGc -3'
miRNA:   3'- aCGGCGCG-----------UCGCAAuuuu----UGCAGA-GC- -5'
24134 5' -50.3 NC_005263.2 + 11518 0.66 0.893542
Target:  5'- gGUCGCGC-GCGaUGAAGGCGgcgCGg -3'
miRNA:   3'- aCGGCGCGuCGCaAUUUUUGCagaGC- -5'
24134 5' -50.3 NC_005263.2 + 42128 0.66 0.893542
Target:  5'- cGUCGUGCuGCGcgacGAGGCGUgUCGc -3'
miRNA:   3'- aCGGCGCGuCGCaau-UUUUGCAgAGC- -5'
24134 5' -50.3 NC_005263.2 + 46928 0.66 0.893542
Target:  5'- cUGCCGCGCAGCac--GAGGCacaaGUCgccgCGa -3'
miRNA:   3'- -ACGGCGCGUCGcaauUUUUG----CAGa---GC- -5'
24134 5' -50.3 NC_005263.2 + 29654 0.67 0.889011
Target:  5'- aGCCGCGCGGCugcuucacGCGcacCUCGa -3'
miRNA:   3'- aCGGCGCGUCGcaauuuu-UGCa--GAGC- -5'
24134 5' -50.3 NC_005263.2 + 37775 0.67 0.885933
Target:  5'- cUGCCGCGCcuGCGcgAGaucgacGAGCGUCguuUCGu -3'
miRNA:   3'- -ACGGCGCGu-CGCaaUU------UUUGCAG---AGC- -5'
24134 5' -50.3 NC_005263.2 + 2960 0.67 0.885933
Target:  5'- aGCUGCGCgAGCGUgaugccCGUCagCGg -3'
miRNA:   3'- aCGGCGCG-UCGCAauuuuuGCAGa-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.