miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24136 5' -51.4 NC_005263.2 + 38704 1.09 0.001692
Target:  5'- cGCAGCCGCGAUACCUUAACCAGACAAg -3'
miRNA:   3'- -CGUCGGCGCUAUGGAAUUGGUCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 25393 0.74 0.387615
Target:  5'- uGC-GCCGCGAgGCCUcGACCuGGCAGa -3'
miRNA:   3'- -CGuCGGCGCUaUGGAaUUGGuCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 32847 0.73 0.467883
Target:  5'- aGC-GCCGCGAcaaGCCgcagcaugUAGCCGGACAGc -3'
miRNA:   3'- -CGuCGGCGCUa--UGGa-------AUUGGUCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 34793 0.73 0.467883
Target:  5'- cGCAGCuCGCGAUGCCgu-ACaucGACAAc -3'
miRNA:   3'- -CGUCG-GCGCUAUGGaauUGgu-CUGUU- -5'
24136 5' -51.4 NC_005263.2 + 16619 0.71 0.567255
Target:  5'- aGCAGCuCGCGccGCUgacgGGCCAGGCGc -3'
miRNA:   3'- -CGUCG-GCGCuaUGGaa--UUGGUCUGUu -5'
24136 5' -51.4 NC_005263.2 + 45364 0.71 0.590188
Target:  5'- gGCGGCCGCGAUcucgGCUgUGACgGGgACGAa -3'
miRNA:   3'- -CGUCGGCGCUA----UGGaAUUGgUC-UGUU- -5'
24136 5' -51.4 NC_005263.2 + 16500 0.71 0.590188
Target:  5'- cGCGGCCGuCGcgACCggcaUGACCAaccGGCAAa -3'
miRNA:   3'- -CGUCGGC-GCuaUGGa---AUUGGU---CUGUU- -5'
24136 5' -51.4 NC_005263.2 + 18463 0.7 0.613277
Target:  5'- aGCAGCCGCGcgGCUgguacacccuUUGGCUgcaGGGCGAa -3'
miRNA:   3'- -CGUCGGCGCuaUGG----------AAUUGG---UCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 21930 0.7 0.634121
Target:  5'- cGCGGCCGCag-ACCguccucauccACCGGACAAc -3'
miRNA:   3'- -CGUCGGCGcuaUGGaau-------UGGUCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 27522 0.7 0.644545
Target:  5'- cCGGUCGCGGUGCCcgUcggcacggccggcaGGCCGGGCAc -3'
miRNA:   3'- cGUCGGCGCUAUGGa-A--------------UUGGUCUGUu -5'
24136 5' -51.4 NC_005263.2 + 2884 0.7 0.648018
Target:  5'- cGCAGCgGCGAggcugAUgUUGGCCgAGACGu -3'
miRNA:   3'- -CGUCGgCGCUa----UGgAAUUGG-UCUGUu -5'
24136 5' -51.4 NC_005263.2 + 31712 0.69 0.659582
Target:  5'- cGCAcCCGCGAUGCCg--GCCAGcuuCAu -3'
miRNA:   3'- -CGUcGGCGCUAUGGaauUGGUCu--GUu -5'
24136 5' -51.4 NC_005263.2 + 37661 0.69 0.694054
Target:  5'- -gGGCaCGCGAUcgACCUgauugAAUCGGACGAg -3'
miRNA:   3'- cgUCG-GCGCUA--UGGAa----UUGGUCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 20442 0.69 0.694054
Target:  5'- gGCGGCCGUGcuUGCCgccGCCgAGACGu -3'
miRNA:   3'- -CGUCGGCGCu-AUGGaauUGG-UCUGUu -5'
24136 5' -51.4 NC_005263.2 + 30357 0.69 0.694054
Target:  5'- cGCGGCCGCGcUGCC---GCCGG-CGc -3'
miRNA:   3'- -CGUCGGCGCuAUGGaauUGGUCuGUu -5'
24136 5' -51.4 NC_005263.2 + 5764 0.69 0.702024
Target:  5'- aGCAGCaCGCGAUacgcuucggucggcACCUUGcgGCCGGuCGc -3'
miRNA:   3'- -CGUCG-GCGCUA--------------UGGAAU--UGGUCuGUu -5'
24136 5' -51.4 NC_005263.2 + 9434 0.68 0.716725
Target:  5'- uUAGCCGCGc-ACCUUGAUCuuGGCGAg -3'
miRNA:   3'- cGUCGGCGCuaUGGAAUUGGu-CUGUU- -5'
24136 5' -51.4 NC_005263.2 + 9963 0.68 0.716725
Target:  5'- uGCAGCuUGUGcgACCaguGCCGGGCAGg -3'
miRNA:   3'- -CGUCG-GCGCuaUGGaauUGGUCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 17399 0.67 0.771547
Target:  5'- cGCGGCCGCGc-GCCU--GgCGGGCGGu -3'
miRNA:   3'- -CGUCGGCGCuaUGGAauUgGUCUGUU- -5'
24136 5' -51.4 NC_005263.2 + 44790 0.67 0.771547
Target:  5'- cGCAGacguugaacaCCGCGcgGCCgcgcCCAGGCAAg -3'
miRNA:   3'- -CGUC----------GGCGCuaUGGaauuGGUCUGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.