miRNA display CGI


Results 1 - 20 of 319 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24137 3' -57.8 NC_005263.2 + 35509 0.66 0.562777
Target:  5'- cGCGGucaGuGGCcccGUAAGUGUGCCGcCGGCg -3'
miRNA:   3'- -CGCUug-C-UCG---CGUUCGCGCGGC-GUCG- -5'
24137 3' -57.8 NC_005263.2 + 1171 0.66 0.541422
Target:  5'- cGCG-GCGAcuuGUGCcucguGCuGCGCgGCAGCg -3'
miRNA:   3'- -CGCuUGCU---CGCGuu---CG-CGCGgCGUCG- -5'
24137 3' -57.8 NC_005263.2 + 39251 0.66 0.541422
Target:  5'- aGCgGGGCucGCGCcccGCGCGCCGCc-- -3'
miRNA:   3'- -CG-CUUGcuCGCGuu-CGCGCGGCGucg -5'
24137 3' -57.8 NC_005263.2 + 32879 0.66 0.541422
Target:  5'- uGCcGGCGGGCgGCGAGUuucguggcgucgGCGUCgGCGGCc -3'
miRNA:   3'- -CGcUUGCUCG-CGUUCG------------CGCGG-CGUCG- -5'
24137 3' -57.8 NC_005263.2 + 24882 0.66 0.541422
Target:  5'- -gGAuACGGGacCGCAAG-GCGUCGguGCa -3'
miRNA:   3'- cgCU-UGCUC--GCGUUCgCGCGGCguCG- -5'
24137 3' -57.8 NC_005263.2 + 18603 0.66 0.530845
Target:  5'- -gGAACGAcgccauGCGCGGGUucGUGCaGCGGCc -3'
miRNA:   3'- cgCUUGCU------CGCGUUCG--CGCGgCGUCG- -5'
24137 3' -57.8 NC_005263.2 + 10259 0.66 0.530845
Target:  5'- uCGAucGCGAuGCGCuucgcauCGCGCCGCuucGCa -3'
miRNA:   3'- cGCU--UGCU-CGCGuuc----GCGCGGCGu--CG- -5'
24137 3' -57.8 NC_005263.2 + 45144 0.66 0.520344
Target:  5'- cGCuGACGGGCaucacGCucGCGCaGCUGCAGg -3'
miRNA:   3'- -CGcUUGCUCG-----CGuuCGCG-CGGCGUCg -5'
24137 3' -57.8 NC_005263.2 + 44539 0.66 0.520344
Target:  5'- gGCGAACGAuguggucgGC-CGA-CGCGCugCGCGGCa -3'
miRNA:   3'- -CGCUUGCU--------CGcGUUcGCGCG--GCGUCG- -5'
24137 3' -57.8 NC_005263.2 + 1494 0.66 0.545673
Target:  5'- cGCGGcacucgguuucuuuCGAGCGCAcGGCGuCGaugaGCAGCu -3'
miRNA:   3'- -CGCUu-------------GCUCGCGU-UCGC-GCgg--CGUCG- -5'
24137 3' -57.8 NC_005263.2 + 373 0.66 0.545673
Target:  5'- cGCGAACaGGCGgcaaccgcCAacgaugccgaugaucAGCGUGCCgaGCAGCu -3'
miRNA:   3'- -CGCUUGcUCGC--------GU---------------UCGCGCGG--CGUCG- -5'
24137 3' -57.8 NC_005263.2 + 10897 0.66 0.552069
Target:  5'- cGUGAGCG-GCGUAucgccGCGCugggggauGCCGCAcGUg -3'
miRNA:   3'- -CGCUUGCuCGCGUu----CGCG--------CGGCGU-CG- -5'
24137 3' -57.8 NC_005263.2 + 42119 0.66 0.562777
Target:  5'- uGCGcuucGCGAGUGaCAAGCaGCGCaGCAaacuGCa -3'
miRNA:   3'- -CGCu---UGCUCGC-GUUCG-CGCGgCGU----CG- -5'
24137 3' -57.8 NC_005263.2 + 35044 0.66 0.562777
Target:  5'- uGCaAGCGcaAGCGCAAGagcagaugaGCGCCGUcucGCa -3'
miRNA:   3'- -CGcUUGC--UCGCGUUCg--------CGCGGCGu--CG- -5'
24137 3' -57.8 NC_005263.2 + 25950 0.66 0.562777
Target:  5'- gGCGcaauGCGAGCGU---CGCGCCGUcgAGg -3'
miRNA:   3'- -CGCu---UGCUCGCGuucGCGCGGCG--UCg -5'
24137 3' -57.8 NC_005263.2 + 16677 0.66 0.562777
Target:  5'- cGUGAACauucaGCAGGaCGUGCCGCAcauGCu -3'
miRNA:   3'- -CGCUUGcucg-CGUUC-GCGCGGCGU---CG- -5'
24137 3' -57.8 NC_005263.2 + 13756 0.66 0.562777
Target:  5'- cCGGuuuacACG-GCGaCAGGCGCGUCGCuuaaugGGCc -3'
miRNA:   3'- cGCU-----UGCuCGC-GUUCGCGCGGCG------UCG- -5'
24137 3' -57.8 NC_005263.2 + 35729 0.66 0.562777
Target:  5'- -aGAcgGCGAGaCGCcGGaagaaGCGgCGCGGCg -3'
miRNA:   3'- cgCU--UGCUC-GCGuUCg----CGCgGCGUCG- -5'
24137 3' -57.8 NC_005263.2 + 14675 0.66 0.552069
Target:  5'- cGUGGcCGAcCGCuacGCGCGC-GCGGCg -3'
miRNA:   3'- -CGCUuGCUcGCGuu-CGCGCGgCGUCG- -5'
24137 3' -57.8 NC_005263.2 + 27527 0.66 0.552069
Target:  5'- cGCGGugcccgucggcACG-GCcgGCAGGCcgggcacgaGCGUCGCGGCg -3'
miRNA:   3'- -CGCU-----------UGCuCG--CGUUCG---------CGCGGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.