Results 21 - 40 of 319 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24137 | 3' | -57.8 | NC_005263.2 | + | 14675 | 0.66 | 0.552069 |
Target: 5'- cGUGGcCGAcCGCuacGCGCGC-GCGGCg -3' miRNA: 3'- -CGCUuGCUcGCGuu-CGCGCGgCGUCG- -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 27527 | 0.66 | 0.552069 |
Target: 5'- cGCGGugcccgucggcACG-GCcgGCAGGCcgggcacgaGCGUCGCGGCg -3' miRNA: 3'- -CGCU-----------UGCuCG--CGUUCG---------CGCGGCGUCG- -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 10897 | 0.66 | 0.552069 |
Target: 5'- cGUGAGCG-GCGUAucgccGCGCugggggauGCCGCAcGUg -3' miRNA: 3'- -CGCUUGCuCGCGUu----CGCG--------CGGCGU-CG- -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 1494 | 0.66 | 0.545673 |
Target: 5'- cGCGGcacucgguuucuuuCGAGCGCAcGGCGuCGaugaGCAGCu -3' miRNA: 3'- -CGCUu-------------GCUCGCGU-UCGC-GCgg--CGUCG- -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 373 | 0.66 | 0.545673 |
Target: 5'- cGCGAACaGGCGgcaaccgcCAacgaugccgaugaucAGCGUGCCgaGCAGCu -3' miRNA: 3'- -CGCUUGcUCGC--------GU---------------UCGCGCGG--CGUCG- -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 20049 | 0.66 | 0.541422 |
Target: 5'- cGCGu-UGAGUGCGA-CGCGCUGCuaacugauGCu -3' miRNA: 3'- -CGCuuGCUCGCGUUcGCGCGGCGu-------CG- -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 24202 | 0.66 | 0.541422 |
Target: 5'- aGCG-AUGcGCGCGaccugguucAGCGCGCCGUu-- -3' miRNA: 3'- -CGCuUGCuCGCGU---------UCGCGCGGCGucg -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 42874 | 0.66 | 0.541422 |
Target: 5'- gGCGccUGAucGCGUcaauGGCGUGCCGCGcGCu -3' miRNA: 3'- -CGCuuGCU--CGCGu---UCGCGCGGCGU-CG- -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 38419 | 0.66 | 0.541422 |
Target: 5'- cGCGu-CGGGUGCGccGGCGUGaCGcCGGCc -3' miRNA: 3'- -CGCuuGCUCGCGU--UCGCGCgGC-GUCG- -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 1171 | 0.66 | 0.541422 |
Target: 5'- cGCG-GCGAcuuGUGCcucguGCuGCGCgGCAGCg -3' miRNA: 3'- -CGCuUGCU---CGCGuu---CG-CGCGgCGUCG- -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 39251 | 0.66 | 0.541422 |
Target: 5'- aGCgGGGCucGCGCcccGCGCGCCGCc-- -3' miRNA: 3'- -CG-CUUGcuCGCGuu-CGCGCGGCGucg -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 24882 | 0.66 | 0.541422 |
Target: 5'- -gGAuACGGGacCGCAAG-GCGUCGguGCa -3' miRNA: 3'- cgCU-UGCUC--GCGUUCgCGCGGCguCG- -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 32879 | 0.66 | 0.541422 |
Target: 5'- uGCcGGCGGGCgGCGAGUuucguggcgucgGCGUCgGCGGCc -3' miRNA: 3'- -CGcUUGCUCG-CGUUCG------------CGCGG-CGUCG- -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 30379 | 0.66 | 0.541422 |
Target: 5'- ----cCGAGUGCGAGCcccaUGCgGCGGCg -3' miRNA: 3'- cgcuuGCUCGCGUUCGc---GCGgCGUCG- -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 20697 | 0.66 | 0.541422 |
Target: 5'- cGCGAAaccuGCGCcGGuCGUGaCGCAGCc -3' miRNA: 3'- -CGCUUgcu-CGCGuUC-GCGCgGCGUCG- -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 11743 | 0.66 | 0.530845 |
Target: 5'- aGCccGCGuuGCGUAAGCGCGaCUGCcacauGCg -3' miRNA: 3'- -CGcuUGCu-CGCGUUCGCGC-GGCGu----CG- -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 9789 | 0.66 | 0.530845 |
Target: 5'- cCGAACGGGgGCGccucGC-CGCgUGCGGCa -3' miRNA: 3'- cGCUUGCUCgCGUu---CGcGCG-GCGUCG- -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 18603 | 0.66 | 0.530845 |
Target: 5'- -gGAACGAcgccauGCGCGGGUucGUGCaGCGGCc -3' miRNA: 3'- cgCUUGCU------CGCGUUCG--CGCGgCGUCG- -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 10259 | 0.66 | 0.530845 |
Target: 5'- uCGAucGCGAuGCGCuucgcauCGCGCCGCuucGCa -3' miRNA: 3'- cGCU--UGCU-CGCGuuc----GCGCGGCGu--CG- -5' |
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24137 | 3' | -57.8 | NC_005263.2 | + | 857 | 0.66 | 0.520344 |
Target: 5'- cGCGGAC-AGCGUAcccGuCGUGCCGgcCGGCg -3' miRNA: 3'- -CGCUUGcUCGCGUu--C-GCGCGGC--GUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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