miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24137 5' -53.5 NC_005263.2 + 34726 0.68 0.655894
Target:  5'- uGGGCGUGGCGagcaauUGCGgcGCGUGUUUc -3'
miRNA:   3'- uUUCGCGCUGC------ACGCaaUGCACGAGc -5'
24137 5' -53.5 NC_005263.2 + 32908 0.7 0.521799
Target:  5'- gGAAGCGCuugccGACGUcGCGcgGCG-GCUCGc -3'
miRNA:   3'- -UUUCGCG-----CUGCA-CGCaaUGCaCGAGC- -5'
24137 5' -53.5 NC_005263.2 + 42058 0.72 0.428468
Target:  5'- uGAAGCGCGccgccaACGaaCGggGCGUGCUCGc -3'
miRNA:   3'- -UUUCGCGC------UGCacGCaaUGCACGAGC- -5'
24137 5' -53.5 NC_005263.2 + 39110 0.72 0.418707
Target:  5'- --cGCGCGAcuCGUGCGccgUGCGUcggcGCUCGu -3'
miRNA:   3'- uuuCGCGCU--GCACGCa--AUGCA----CGAGC- -5'
24137 5' -53.5 NC_005263.2 + 5918 0.72 0.418707
Target:  5'- -cGGCGCGGCGUGCGU-ACGga-UCa -3'
miRNA:   3'- uuUCGCGCUGCACGCAaUGCacgAGc -5'
24137 5' -53.5 NC_005263.2 + 31027 0.78 0.178588
Target:  5'- cGAGGCGCGGCGUGCGc----UGCUCGa -3'
miRNA:   3'- -UUUCGCGCUGCACGCaaugcACGAGC- -5'
24137 5' -53.5 NC_005263.2 + 25562 0.66 0.733642
Target:  5'- cGAGCGCGACGUcgGCGUccGCGccGCcCGu -3'
miRNA:   3'- uUUCGCGCUGCA--CGCAa-UGCa-CGaGC- -5'
24137 5' -53.5 NC_005263.2 + 11523 0.66 0.733642
Target:  5'- --cGCGCGAUGaagGCGgcGCG-GUUCGu -3'
miRNA:   3'- uuuCGCGCUGCa--CGCaaUGCaCGAGC- -5'
24137 5' -53.5 NC_005263.2 + 41378 0.67 0.722759
Target:  5'- --cGCGCGA-GUGUG-UACGUguggcGCUCGa -3'
miRNA:   3'- uuuCGCGCUgCACGCaAUGCA-----CGAGC- -5'
24137 5' -53.5 NC_005263.2 + 1287 0.67 0.722759
Target:  5'- -uGGCGCG-CGuUGCGUUACGcGaUCGg -3'
miRNA:   3'- uuUCGCGCuGC-ACGCAAUGCaCgAGC- -5'
24137 5' -53.5 NC_005263.2 + 20112 0.67 0.68959
Target:  5'- gAAGGCGCGGa-UGCGcagGCGUacGCUCGc -3'
miRNA:   3'- -UUUCGCGCUgcACGCaa-UGCA--CGAGC- -5'
24137 5' -53.5 NC_005263.2 + 46537 0.66 0.733642
Target:  5'- cAAGCGUGccgucuauacCGUGCGcaacacgaACGUGCUCGg -3'
miRNA:   3'- uUUCGCGCu---------GCACGCaa------UGCACGAGC- -5'
24137 5' -53.5 NC_005263.2 + 19941 0.67 0.68959
Target:  5'- cAAGCuucCGACGauuaUGCGcucGCGUGCUCGg -3'
miRNA:   3'- uUUCGc--GCUGC----ACGCaa-UGCACGAGC- -5'
24137 5' -53.5 NC_005263.2 + 9181 0.66 0.732558
Target:  5'- --uGCGCGACGUcgagcucgGCGcgGCGcccggcuUGCUCGu -3'
miRNA:   3'- uuuCGCGCUGCA--------CGCaaUGC-------ACGAGC- -5'
24137 5' -53.5 NC_005263.2 + 8863 0.66 0.765595
Target:  5'- cGGGGCGCGAgcccCGcuaUGCGUUACGcGCcCGu -3'
miRNA:   3'- -UUUCGCGCU----GC---ACGCAAUGCaCGaGC- -5'
24137 5' -53.5 NC_005263.2 + 37401 0.68 0.610692
Target:  5'- --uGCGCGACGUGCaucGCGUcGCgCGg -3'
miRNA:   3'- uuuCGCGCUGCACGcaaUGCA-CGaGC- -5'
24137 5' -53.5 NC_005263.2 + 38426 1.08 0.001529
Target:  5'- cAAAGCGCGACGUGCGUUACGUGCUCGg -3'
miRNA:   3'- -UUUCGCGCUGCACGCAAUGCACGAGC- -5'
24137 5' -53.5 NC_005263.2 + 2665 0.74 0.324058
Target:  5'- cGAGGUGCaGGCGUGCGUUgugguagcugaucgcGCGgccGCUCGg -3'
miRNA:   3'- -UUUCGCG-CUGCACGCAA---------------UGCa--CGAGC- -5'
24137 5' -53.5 NC_005263.2 + 40539 0.73 0.354336
Target:  5'- cAAGgGCGAUGUGCGagACGUGaUCGa -3'
miRNA:   3'- uUUCgCGCUGCACGCaaUGCACgAGC- -5'
24137 5' -53.5 NC_005263.2 + 3820 0.73 0.371102
Target:  5'- -cAGCGCGuauuuguACGUGCGggugaaGUGCUCGg -3'
miRNA:   3'- uuUCGCGC-------UGCACGCaaug--CACGAGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.