miRNA display CGI


Results 21 - 31 of 31 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24137 5' -53.5 NC_005263.2 + 35328 0.71 0.458534
Target:  5'- cAGGCGCaauccGACGUGCuUUACGUGCa-- -3'
miRNA:   3'- uUUCGCG-----CUGCACGcAAUGCACGagc -5'
24137 5' -53.5 NC_005263.2 + 42058 0.72 0.428468
Target:  5'- uGAAGCGCGccgccaACGaaCGggGCGUGCUCGc -3'
miRNA:   3'- -UUUCGCGC------UGCacGCaaUGCACGAGC- -5'
24137 5' -53.5 NC_005263.2 + 18754 0.72 0.428468
Target:  5'- -cGGCGCGAuCGUagGCGgcGCGgUGCUCGc -3'
miRNA:   3'- uuUCGCGCU-GCA--CGCaaUGC-ACGAGC- -5'
24137 5' -53.5 NC_005263.2 + 39110 0.72 0.418707
Target:  5'- --cGCGCGAcuCGUGCGccgUGCGUcggcGCUCGu -3'
miRNA:   3'- uuuCGCGCU--GCACGCa--AUGCA----CGAGC- -5'
24137 5' -53.5 NC_005263.2 + 5918 0.72 0.418707
Target:  5'- -cGGCGCGGCGUGCGU-ACGga-UCa -3'
miRNA:   3'- uuUCGCGCUGCACGCAaUGCacgAGc -5'
24137 5' -53.5 NC_005263.2 + 11984 0.72 0.390253
Target:  5'- cAGGCGCGcaGCGUcGUGUUACGggccaGCUCGu -3'
miRNA:   3'- uUUCGCGC--UGCA-CGCAAUGCa----CGAGC- -5'
24137 5' -53.5 NC_005263.2 + 3820 0.73 0.371102
Target:  5'- -cAGCGCGuauuuguACGUGCGggugaaGUGCUCGg -3'
miRNA:   3'- uuUCGCGC-------UGCACGCaaug--CACGAGC- -5'
24137 5' -53.5 NC_005263.2 + 40539 0.73 0.354336
Target:  5'- cAAGgGCGAUGUGCGagACGUGaUCGa -3'
miRNA:   3'- uUUCgCGCUGCACGCaaUGCACgAGC- -5'
24137 5' -53.5 NC_005263.2 + 2665 0.74 0.324058
Target:  5'- cGAGGUGCaGGCGUGCGUUgugguagcugaucgcGCGgccGCUCGg -3'
miRNA:   3'- -UUUCGCG-CUGCACGCAA---------------UGCa--CGAGC- -5'
24137 5' -53.5 NC_005263.2 + 31027 0.78 0.178588
Target:  5'- cGAGGCGCGGCGUGCGc----UGCUCGa -3'
miRNA:   3'- -UUUCGCGCUGCACGCaaugcACGAGC- -5'
24137 5' -53.5 NC_005263.2 + 38426 1.08 0.001529
Target:  5'- cAAAGCGCGACGUGCGUUACGUGCUCGg -3'
miRNA:   3'- -UUUCGCGCUGCACGCAAUGCACGAGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.