miRNA display CGI


Results 1 - 20 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24138 3' -57.3 NC_005263.2 + 18604 0.66 0.536155
Target:  5'- cGACGGaCGCc-GCAGCGGcgUUCgcgGCAGGu -3'
miRNA:   3'- -CUGCC-GCGuaCGUCGCU--AGGa--CGUCU- -5'
24138 3' -57.3 NC_005263.2 + 47523 0.66 0.536155
Target:  5'- cGCGGCGCucgaauaccUGCAGCuGUCCaGCAa- -3'
miRNA:   3'- cUGCCGCGu--------ACGUCGcUAGGaCGUcu -5'
24138 3' -57.3 NC_005263.2 + 29514 0.66 0.525428
Target:  5'- uGCGGCGUccGuCGGCGcgCCaGCAGu -3'
miRNA:   3'- cUGCCGCGuaC-GUCGCuaGGaCGUCu -5'
24138 3' -57.3 NC_005263.2 + 36626 0.66 0.515844
Target:  5'- cGACGGCGCAguuuaacagugcgcgGCAGCGcgagcucggCUUGCAu- -3'
miRNA:   3'- -CUGCCGCGUa--------------CGUCGCua-------GGACGUcu -5'
24138 3' -57.3 NC_005263.2 + 37360 0.66 0.514783
Target:  5'- cGACGGcCGCAUGCGcguGCGcgaCUGCAu- -3'
miRNA:   3'- -CUGCC-GCGUACGU---CGCuagGACGUcu -5'
24138 3' -57.3 NC_005263.2 + 21644 0.66 0.514783
Target:  5'- cGCGGCGUAUgGCacucgcgcaccaAGCGcUgCUGCAGAu -3'
miRNA:   3'- cUGCCGCGUA-CG------------UCGCuAgGACGUCU- -5'
24138 3' -57.3 NC_005263.2 + 2708 0.66 0.514783
Target:  5'- cGGCaGGUGCAUgcGCAGCGcgCgUGCAu- -3'
miRNA:   3'- -CUG-CCGCGUA--CGUCGCuaGgACGUcu -5'
24138 3' -57.3 NC_005263.2 + 6802 0.66 0.514783
Target:  5'- gGGCGGCGuCAauugcacuUGCAGUGA--CUGCAGu -3'
miRNA:   3'- -CUGCCGC-GU--------ACGUCGCUagGACGUCu -5'
24138 3' -57.3 NC_005263.2 + 19871 0.66 0.504228
Target:  5'- cACGGCGagcGCGGCGAgcgcggCCgaUGCAGGc -3'
miRNA:   3'- cUGCCGCguaCGUCGCUa-----GG--ACGUCU- -5'
24138 3' -57.3 NC_005263.2 + 27280 0.66 0.504228
Target:  5'- cGACuGCGCGagGCcgAGcCGcgCCUGCAGAa -3'
miRNA:   3'- -CUGcCGCGUa-CG--UC-GCuaGGACGUCU- -5'
24138 3' -57.3 NC_005263.2 + 43208 0.67 0.493766
Target:  5'- cGACGGCGCGcuaucGCAGCGcgCgcuacaUGguGAg -3'
miRNA:   3'- -CUGCCGCGUa----CGUCGCuaGg-----ACguCU- -5'
24138 3' -57.3 NC_005263.2 + 17395 0.67 0.493766
Target:  5'- -cCGGCGCG-GCcGCGcgCCUGgCGGGc -3'
miRNA:   3'- cuGCCGCGUaCGuCGCuaGGAC-GUCU- -5'
24138 3' -57.3 NC_005263.2 + 37621 0.67 0.493766
Target:  5'- cGACGGCaaGCAccugcGCGGCGA-CCUGCu-- -3'
miRNA:   3'- -CUGCCG--CGUa----CGUCGCUaGGACGucu -5'
24138 3' -57.3 NC_005263.2 + 46178 0.67 0.483405
Target:  5'- -cCGGUGCcgGC-GCGcUCgUGCAGAc -3'
miRNA:   3'- cuGCCGCGuaCGuCGCuAGgACGUCU- -5'
24138 3' -57.3 NC_005263.2 + 18366 0.67 0.483405
Target:  5'- -cCGGCGCAccUGCAGaCGAUCaagGCGa- -3'
miRNA:   3'- cuGCCGCGU--ACGUC-GCUAGga-CGUcu -5'
24138 3' -57.3 NC_005263.2 + 15377 0.67 0.47315
Target:  5'- cGGCaGCGCGuacguUGCauuGGCGAUCCgcacgGCGGGc -3'
miRNA:   3'- -CUGcCGCGU-----ACG---UCGCUAGGa----CGUCU- -5'
24138 3' -57.3 NC_005263.2 + 32099 0.67 0.463006
Target:  5'- cGGCGGCGUcgGU-GCGAUCgaGCGc- -3'
miRNA:   3'- -CUGCCGCGuaCGuCGCUAGgaCGUcu -5'
24138 3' -57.3 NC_005263.2 + 32920 0.67 0.45198
Target:  5'- cGACGucGCGCG-GCGGCucgcgucGAUCaCUGCGGAa -3'
miRNA:   3'- -CUGC--CGCGUaCGUCG-------CUAG-GACGUCU- -5'
24138 3' -57.3 NC_005263.2 + 44169 0.68 0.43328
Target:  5'- uGGCuGGCGCGUGCgaGGCGcuaggCCUGCcGGu -3'
miRNA:   3'- -CUG-CCGCGUACG--UCGCua---GGACGuCU- -5'
24138 3' -57.3 NC_005263.2 + 42320 0.68 0.42362
Target:  5'- aGACGGCGCA-GCGGCG--CgUGCGcGAc -3'
miRNA:   3'- -CUGCCGCGUaCGUCGCuaGgACGU-CU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.