miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24138 5' -65.5 NC_005263.2 + 27662 0.66 0.229529
Target:  5'- cGuCUCGGCGGCGGcaaGCacggccgccuucuugUGCGCgCCGg- -3'
miRNA:   3'- uC-GAGCCGCCGCCa--CG---------------ACGCG-GGCgu -5'
24138 5' -65.5 NC_005263.2 + 1460 0.66 0.229529
Target:  5'- cGCUC-GCGGCGcUGCagcaugaacagcagGCGCUCGCGg -3'
miRNA:   3'- uCGAGcCGCCGCcACGa-------------CGCGGGCGU- -5'
24138 5' -65.5 NC_005263.2 + 41557 0.66 0.218299
Target:  5'- cGCgccgUGGCGGCGaUGCgagcuuucgcgcguaUGCGCgCCGCu -3'
miRNA:   3'- uCGa---GCCGCCGCcACG---------------ACGCG-GGCGu -5'
24138 5' -65.5 NC_005263.2 + 45092 0.66 0.21611
Target:  5'- aAGUUCGcgcgcuacgucGCGGCGGa--UGCGCCgGCGa -3'
miRNA:   3'- -UCGAGC-----------CGCCGCCacgACGCGGgCGU- -5'
24138 5' -65.5 NC_005263.2 + 34064 0.66 0.21394
Target:  5'- cGCUCGacGCGGCGcccguggccgaaccGUcgccgucGCUGCGCCuCGCGc -3'
miRNA:   3'- uCGAGC--CGCCGC--------------CA-------CGACGCGG-GCGU- -5'
24138 5' -65.5 NC_005263.2 + 30802 0.66 0.21072
Target:  5'- uGCUCGGCGGCGacGUGCU-CGgCgGaCAg -3'
miRNA:   3'- uCGAGCCGCCGC--CACGAcGCgGgC-GU- -5'
24138 5' -65.5 NC_005263.2 + 32672 0.66 0.205446
Target:  5'- cGGgUCGGCGGCGaUGUcgacgUGCGUCaGCAg -3'
miRNA:   3'- -UCgAGCCGCCGCcACG-----ACGCGGgCGU- -5'
24138 5' -65.5 NC_005263.2 + 35496 0.67 0.192267
Target:  5'- cAGCgcaUGGCcgaaGGCGGUGacacuggcgcgccgaCUGCGCCCgGCGg -3'
miRNA:   3'- -UCGa--GCCG----CCGCCAC---------------GACGCGGG-CGU- -5'
24138 5' -65.5 NC_005263.2 + 8540 0.67 0.190306
Target:  5'- cGGCUCGGCGGUGaugaaUGCcGCGaCCaGCGu -3'
miRNA:   3'- -UCGAGCCGCCGCc----ACGaCGC-GGgCGU- -5'
24138 5' -65.5 NC_005263.2 + 38127 0.67 0.180765
Target:  5'- cGGCgaacCGGaCGGC-GUGC-GCaGCCCGCAg -3'
miRNA:   3'- -UCGa---GCC-GCCGcCACGaCG-CGGGCGU- -5'
24138 5' -65.5 NC_005263.2 + 31476 0.67 0.167248
Target:  5'- aAGUUCGGCGccuggcccgucaGCGGcgcgaGCUGCuGCUCGCGc -3'
miRNA:   3'- -UCGAGCCGC------------CGCCa----CGACG-CGGGCGU- -5'
24138 5' -65.5 NC_005263.2 + 21234 0.68 0.162948
Target:  5'- cGGCUuucgcaucgaCGGC-GCGGUGC-GCGCCaCGUAu -3'
miRNA:   3'- -UCGA----------GCCGcCGCCACGaCGCGG-GCGU- -5'
24138 5' -65.5 NC_005263.2 + 3311 0.68 0.162948
Target:  5'- gGGCgCGGcCGcGCGGUGUucaacgucUGCGCgCCGCc -3'
miRNA:   3'- -UCGaGCC-GC-CGCCACG--------ACGCG-GGCGu -5'
24138 5' -65.5 NC_005263.2 + 2704 0.68 0.154645
Target:  5'- cGCUCGGCa--GGUGCaUGCGCagCGCGc -3'
miRNA:   3'- uCGAGCCGccgCCACG-ACGCGg-GCGU- -5'
24138 5' -65.5 NC_005263.2 + 25367 0.68 0.154645
Target:  5'- -cCUCGGCGGCcugaucGGUGCgcucaUGCG-CCGCGa -3'
miRNA:   3'- ucGAGCCGCCG------CCACG-----ACGCgGGCGU- -5'
24138 5' -65.5 NC_005263.2 + 29290 0.68 0.150638
Target:  5'- gAGCUgcaCGGCGGcCGGgucgGCaUGCGCaUCGCGc -3'
miRNA:   3'- -UCGA---GCCGCC-GCCa---CG-ACGCG-GGCGU- -5'
24138 5' -65.5 NC_005263.2 + 21114 0.68 0.142908
Target:  5'- gAGCcCGGCGcaGCgGGUGCUGCucgGCgCGCAg -3'
miRNA:   3'- -UCGaGCCGC--CG-CCACGACG---CGgGCGU- -5'
24138 5' -65.5 NC_005263.2 + 20687 0.69 0.131991
Target:  5'- uGUUCGGCGGCGcGaaacCUGCGCCgGUc -3'
miRNA:   3'- uCGAGCCGCCGC-Cac--GACGCGGgCGu -5'
24138 5' -65.5 NC_005263.2 + 4178 0.69 0.128184
Target:  5'- cGCUCGugcugcaGCGGCGuGUGCuucUGCGCCUGa- -3'
miRNA:   3'- uCGAGC-------CGCCGC-CACG---ACGCGGGCgu -5'
24138 5' -65.5 NC_005263.2 + 27374 0.69 0.118948
Target:  5'- gAGCggcgCGGCGGCGGccggcgcgcugaccgGCUGCGUCacgaccggCGCAg -3'
miRNA:   3'- -UCGa---GCCGCCGCCa--------------CGACGCGG--------GCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.