miRNA display CGI


Results 1 - 20 of 80 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24139 5' -58.1 NC_005263.2 + 37805 1.12 0.000316
Target:  5'- cUCGUUGACGACGGGCGCGCAUCCGGCg -3'
miRNA:   3'- -AGCAACUGCUGCCCGCGCGUAGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 25180 0.84 0.035143
Target:  5'- gUCGUUuGgGACGGGCGCGCAgcuugggcaccuccgUCCGGCa -3'
miRNA:   3'- -AGCAAcUgCUGCCCGCGCGU---------------AGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 14361 0.82 0.054779
Target:  5'- uUCGUUGACGACGGGCccgaugccgggccGCuCGUCCGGg -3'
miRNA:   3'- -AGCAACUGCUGCCCG-------------CGcGUAGGCCg -5'
24139 5' -58.1 NC_005263.2 + 27381 0.77 0.120429
Target:  5'- gCGgcGGCGGCcGGCGCGCugaCCGGCu -3'
miRNA:   3'- aGCaaCUGCUGcCCGCGCGua-GGCCG- -5'
24139 5' -58.1 NC_005263.2 + 24702 0.75 0.153829
Target:  5'- gCGUUGAuCGACGGGCaaucgcaucGCGCGauguUCgCGGCa -3'
miRNA:   3'- aGCAACU-GCUGCCCG---------CGCGU----AG-GCCG- -5'
24139 5' -58.1 NC_005263.2 + 30202 0.75 0.166714
Target:  5'- cCGUUGAUgcuGAUcGGCGCGCcgCCGGUc -3'
miRNA:   3'- aGCAACUG---CUGcCCGCGCGuaGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 36159 0.74 0.180559
Target:  5'- -gGUUGGCGACGGcCuGCGCGaCCGGUg -3'
miRNA:   3'- agCAACUGCUGCCcG-CGCGUaGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 35539 0.73 0.222541
Target:  5'- cCGgcGGCGcGCGGGCgggcgcuacgGCGCcgCCGGCc -3'
miRNA:   3'- aGCaaCUGC-UGCCCG----------CGCGuaGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 28116 0.73 0.222541
Target:  5'- gUCGUUGACGGCaGuGGCGC-CGUCUuGCa -3'
miRNA:   3'- -AGCAACUGCUG-C-CCGCGcGUAGGcCG- -5'
24139 5' -58.1 NC_005263.2 + 24944 0.73 0.222541
Target:  5'- gCGgcgGACGGCGGuGCGCGguUCgcagauCGGCa -3'
miRNA:   3'- aGCaa-CUGCUGCC-CGCGCguAG------GCCG- -5'
24139 5' -58.1 NC_005263.2 + 27122 0.73 0.228337
Target:  5'- aCGUcGACGcGCaGGCGCGCAgccgcgUCGGCg -3'
miRNA:   3'- aGCAaCUGC-UGcCCGCGCGUa-----GGCCG- -5'
24139 5' -58.1 NC_005263.2 + 24798 0.72 0.234261
Target:  5'- cUCGccgGGCGuCGgcGGCGCGUAUUCGGCc -3'
miRNA:   3'- -AGCaa-CUGCuGC--CCGCGCGUAGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 37923 0.72 0.240313
Target:  5'- -aGcgGGCG-CaGGCGCGCcgCCGGCa -3'
miRNA:   3'- agCaaCUGCuGcCCGCGCGuaGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 43364 0.72 0.26187
Target:  5'- gUCGgugaaagcUGGCGugcucGCGGGCGCGacguacccggacgaGUCCGGCa -3'
miRNA:   3'- -AGCa-------ACUGC-----UGCCCGCGCg-------------UAGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 20581 0.71 0.286382
Target:  5'- cCGgccgUGcCGACGGGCacCGCGaCCGGCu -3'
miRNA:   3'- aGCa---ACuGCUGCCCGc-GCGUaGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 35750 0.71 0.286382
Target:  5'- gCGUaGGCG-CGGGCGCGguUacugCGGCu -3'
miRNA:   3'- aGCAaCUGCuGCCCGCGCguAg---GCCG- -5'
24139 5' -58.1 NC_005263.2 + 30923 0.7 0.315697
Target:  5'- ----cGGCGACGGcGUacgcgcgagcuGCGCAUUCGGCu -3'
miRNA:   3'- agcaaCUGCUGCC-CG-----------CGCGUAGGCCG- -5'
24139 5' -58.1 NC_005263.2 + 3977 0.7 0.323371
Target:  5'- cCGUUGua-ACGGGCGcCGCcgCCGaGCa -3'
miRNA:   3'- aGCAACugcUGCCCGC-GCGuaGGC-CG- -5'
24139 5' -58.1 NC_005263.2 + 13941 0.7 0.326479
Target:  5'- cCGUUGAagucgagcgcauagGACGcGGCGCGCGUUCgcggGGCg -3'
miRNA:   3'- aGCAACUg-------------CUGC-CCGCGCGUAGG----CCG- -5'
24139 5' -58.1 NC_005263.2 + 6663 0.7 0.328825
Target:  5'- aCGUgcggGGCGcAUGGGCGCGCAgggauuugaacaggUCaacgaGGCg -3'
miRNA:   3'- aGCAa---CUGC-UGCCCGCGCGU--------------AGg----CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.