miRNA display CGI


Results 1 - 20 of 193 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24140 3' -57.8 NC_005263.2 + 38648 0.66 0.592414
Target:  5'- cCGCGUCGCGCAucgacgccaaccucGccaagaucaaggugcGCGGCUaACAGCgCCg -3'
miRNA:   3'- -GUGCAGCGCGU--------------C---------------UGCCGGcUGUUG-GG- -5'
24140 3' -57.8 NC_005263.2 + 12692 0.66 0.591339
Target:  5'- uCGCGUCgagcuugccgGCGUAGG-GGCCGucCGGCUCg -3'
miRNA:   3'- -GUGCAG----------CGCGUCUgCCGGCu-GUUGGG- -5'
24140 3' -57.8 NC_005263.2 + 9186 0.66 0.591339
Target:  5'- gACGUCGaGCu--CGGCgCGGC-GCCCg -3'
miRNA:   3'- gUGCAGCgCGucuGCCG-GCUGuUGGG- -5'
24140 3' -57.8 NC_005263.2 + 17590 0.66 0.591339
Target:  5'- uGC-UCGCGCAgcggggucacGACGcGCUGACGAUCa -3'
miRNA:   3'- gUGcAGCGCGU----------CUGC-CGGCUGUUGGg -5'
24140 3' -57.8 NC_005263.2 + 43944 0.66 0.591339
Target:  5'- gCAUGUCGacgGCGGACuugugggaaGUCgGACAGCCCg -3'
miRNA:   3'- -GUGCAGCg--CGUCUGc--------CGG-CUGUUGGG- -5'
24140 3' -57.8 NC_005263.2 + 23947 0.66 0.591339
Target:  5'- gCGCGUCGUgaGCGuGACGGU--GCcACCCg -3'
miRNA:   3'- -GUGCAGCG--CGU-CUGCCGgcUGuUGGG- -5'
24140 3' -57.8 NC_005263.2 + 16865 0.66 0.591339
Target:  5'- cCGCGcCGCGCGGAa--CCGAagcGCCCc -3'
miRNA:   3'- -GUGCaGCGCGUCUgccGGCUgu-UGGG- -5'
24140 3' -57.8 NC_005263.2 + 20422 0.66 0.591339
Target:  5'- gGCGccggCGCGCacaagaAGGCGGCCGuGCuuGCCg -3'
miRNA:   3'- gUGCa---GCGCG------UCUGCCGGC-UGu-UGGg -5'
24140 3' -57.8 NC_005263.2 + 28972 0.66 0.591339
Target:  5'- gACGaCGCGCAaGCGcCCGGCGAUgCg -3'
miRNA:   3'- gUGCaGCGCGUcUGCcGGCUGUUGgG- -5'
24140 3' -57.8 NC_005263.2 + 32668 0.66 0.587045
Target:  5'- uCGCGcugccUCGCGCcguaccuGuACGGCCGGCucaccggcuugcuGCCCg -3'
miRNA:   3'- -GUGC-----AGCGCGu------C-UGCCGGCUGu------------UGGG- -5'
24140 3' -57.8 NC_005263.2 + 29020 0.66 0.580614
Target:  5'- uGCGUUGCGCAccgcGACG-CCGuacugacgcGCGGCCUu -3'
miRNA:   3'- gUGCAGCGCGU----CUGCcGGC---------UGUUGGG- -5'
24140 3' -57.8 NC_005263.2 + 18805 0.66 0.580614
Target:  5'- gCGCGaUGCGCAugccGAccCGGCCGccguGCAGCUCa -3'
miRNA:   3'- -GUGCaGCGCGU----CU--GCCGGC----UGUUGGG- -5'
24140 3' -57.8 NC_005263.2 + 28315 0.66 0.580614
Target:  5'- uCGCGgCGCGaaucuGGuCGGCCGcCgAGCCCg -3'
miRNA:   3'- -GUGCaGCGCg----UCuGCCGGCuG-UUGGG- -5'
24140 3' -57.8 NC_005263.2 + 6831 0.66 0.56993
Target:  5'- uGCGggaaGCGCAgcGACGGCgacacgaccggCGACAgguaGCCCu -3'
miRNA:   3'- gUGCag--CGCGU--CUGCCG-----------GCUGU----UGGG- -5'
24140 3' -57.8 NC_005263.2 + 25683 0.66 0.56993
Target:  5'- uCGCucUCGUGCucgucuuGACGGUCGcCAACCUg -3'
miRNA:   3'- -GUGc-AGCGCGu------CUGCCGGCuGUUGGG- -5'
24140 3' -57.8 NC_005263.2 + 14961 0.66 0.56993
Target:  5'- gGCGcCGCGCc-AUGGCUGGCGGCa- -3'
miRNA:   3'- gUGCaGCGCGucUGCCGGCUGUUGgg -5'
24140 3' -57.8 NC_005263.2 + 27891 0.66 0.56993
Target:  5'- gGCGgCGCGCAGuCGGgcaaagcacUCGACGgcggcgcgucGCCCg -3'
miRNA:   3'- gUGCaGCGCGUCuGCC---------GGCUGU----------UGGG- -5'
24140 3' -57.8 NC_005263.2 + 4373 0.66 0.56993
Target:  5'- gCGCGgucaGCGCAuGCGGUCGGCGAauaCUu -3'
miRNA:   3'- -GUGCag--CGCGUcUGCCGGCUGUUg--GG- -5'
24140 3' -57.8 NC_005263.2 + 36854 0.66 0.56993
Target:  5'- uGgGUCGCacGCccGGCGGUCGAgaauuCGACCCg -3'
miRNA:   3'- gUgCAGCG--CGu-CUGCCGGCU-----GUUGGG- -5'
24140 3' -57.8 NC_005263.2 + 43026 0.66 0.568865
Target:  5'- gCAC--UGCGCGGguuggcaccugacGCGGCgCGACAaugGCCCg -3'
miRNA:   3'- -GUGcaGCGCGUC-------------UGCCG-GCUGU---UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.