miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24140 5' -55.3 NC_005263.2 + 37940 0.69 0.474779
Target:  5'- ---cGcCGGCaGC-CGGUGCGCAACc -3'
miRNA:   3'- uauaCaGCCGcCGaGCCACGUGUUGc -5'
24140 5' -55.3 NC_005263.2 + 46552 0.69 0.464544
Target:  5'- --cUGUCGGcCGGCUUcGUGUuCAACGa -3'
miRNA:   3'- uauACAGCC-GCCGAGcCACGuGUUGC- -5'
24140 5' -55.3 NC_005263.2 + 21099 0.69 0.464544
Target:  5'- -gGUGUgGGCGGCgaCGaGcccgGCGCAGCGg -3'
miRNA:   3'- uaUACAgCCGCCGa-GC-Ca---CGUGUUGC- -5'
24140 5' -55.3 NC_005263.2 + 19085 0.69 0.454425
Target:  5'- ---aGUaCGGCGucgCGGUGCGCAACGc -3'
miRNA:   3'- uauaCA-GCCGCcgaGCCACGUGUUGC- -5'
24140 5' -55.3 NC_005263.2 + 24940 0.69 0.454425
Target:  5'- -gGUGgCGGCGGacggCGGUGCGCGGu- -3'
miRNA:   3'- uaUACaGCCGCCga--GCCACGUGUUgc -5'
24140 5' -55.3 NC_005263.2 + 12092 0.69 0.444427
Target:  5'- --uUGUCGucGCGGCcUGGcaUGCGCAGCGg -3'
miRNA:   3'- uauACAGC--CGCCGaGCC--ACGUGUUGC- -5'
24140 5' -55.3 NC_005263.2 + 9371 0.7 0.415195
Target:  5'- ---cGcCGGCGGCUgCGGgaauuucaGCGCGGCGg -3'
miRNA:   3'- uauaCaGCCGCCGA-GCCa-------CGUGUUGC- -5'
24140 5' -55.3 NC_005263.2 + 43239 0.7 0.405716
Target:  5'- -gGUGagCGGCGGCagCGGcaucgGCACGGCGc -3'
miRNA:   3'- uaUACa-GCCGCCGa-GCCa----CGUGUUGC- -5'
24140 5' -55.3 NC_005263.2 + 37444 0.73 0.295577
Target:  5'- ---cGUCGGCGcGCgCGGUcuGCGCGGCGu -3'
miRNA:   3'- uauaCAGCCGC-CGaGCCA--CGUGUUGC- -5'
24140 5' -55.3 NC_005263.2 + 25368 0.73 0.280853
Target:  5'- ----cUCGGCGGCcugaUCGGUGCGCucauGCGc -3'
miRNA:   3'- uauacAGCCGCCG----AGCCACGUGu---UGC- -5'
24140 5' -55.3 NC_005263.2 + 32095 0.73 0.273711
Target:  5'- -cGUG-CGGCGGCgUCGGUGCGaucgAGCGc -3'
miRNA:   3'- uaUACaGCCGCCG-AGCCACGUg---UUGC- -5'
24140 5' -55.3 NC_005263.2 + 14089 0.74 0.253161
Target:  5'- -cAUGUCGGCuGGUacCGGcUGCGCGGCGg -3'
miRNA:   3'- uaUACAGCCG-CCGa-GCC-ACGUGUUGC- -5'
24140 5' -55.3 NC_005263.2 + 24789 0.75 0.204539
Target:  5'- ---cGUCGGCGGCUCGccggGCGuCGGCGg -3'
miRNA:   3'- uauaCAGCCGCCGAGCca--CGU-GUUGC- -5'
24140 5' -55.3 NC_005263.2 + 37587 1.06 0.001183
Target:  5'- aAUAUGUCGGCGGCUCGGUGCACAACGu -3'
miRNA:   3'- -UAUACAGCCGCCGAGCCACGUGUUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.