Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 24141 | 3' | -57.4 | NC_005263.2 | + | 17335 | 0.66 | 0.587537 |
|
Target: 5'- cGCCgGuGGCUUCGAcgUUCGGcAUCGCGgUCg -3' miRNA: 3'- -UGGaC-CCGGAGCU--AGGCU-UAGCGC-AG- -5' |
|||||||
| 24141 | 3' | -57.4 | NC_005263.2 | + | 22324 | 0.66 | 0.544424 |
|
Target: 5'- ---cGGGCgUCGAcgUCGAGUCGCG-Ca -3' miRNA: 3'- uggaCCCGgAGCUa-GGCUUAGCGCaG- -5' |
|||||||
| 24141 | 3' | -57.4 | NC_005263.2 | + | 17130 | 0.66 | 0.533797 |
|
Target: 5'- gGCCUGGGguuCCUCGG--CGAagcgGUCGaCGUCg -3' miRNA: 3'- -UGGACCC---GGAGCUagGCU----UAGC-GCAG- -5' |
|||||||
| 24141 | 3' | -57.4 | NC_005263.2 | + | 1030 | 0.66 | 0.533797 |
|
Target: 5'- ---cGGGCCUUGAUCUGGAUCagGCa-- -3' miRNA: 3'- uggaCCCGGAGCUAGGCUUAG--CGcag -5' |
|||||||
| 24141 | 3' | -57.4 | NC_005263.2 | + | 45935 | 0.68 | 0.461835 |
|
Target: 5'- -gCUGGGCgcguCUCGcgCCGGAUCaGCGcCa -3' miRNA: 3'- ugGACCCG----GAGCuaGGCUUAG-CGCaG- -5' |
|||||||
| 24141 | 3' | -57.4 | NC_005263.2 | + | 10392 | 0.68 | 0.413689 |
|
Target: 5'- cGCC-GGGCCggccggCGAgcgggUCCGGcgCGCGUUc -3' miRNA: 3'- -UGGaCCCGGa-----GCU-----AGGCUuaGCGCAG- -5' |
|||||||
| 24141 | 3' | -57.4 | NC_005263.2 | + | 16628 | 0.69 | 0.377475 |
|
Target: 5'- cGCCgcugacGGGCCagGcgCCGAAcuugcaggcgcUCGCGUCg -3' miRNA: 3'- -UGGa-----CCCGGagCuaGGCUU-----------AGCGCAG- -5' |
|||||||
| 24141 | 3' | -57.4 | NC_005263.2 | + | 28788 | 0.72 | 0.268336 |
|
Target: 5'- uCCUGGuuGCCUUGcgcAUCCGGG-CGCGUCa -3' miRNA: 3'- uGGACC--CGGAGC---UAGGCUUaGCGCAG- -5' |
|||||||
| 24141 | 3' | -57.4 | NC_005263.2 | + | 37445 | 1.09 | 0.000551 |
|
Target: 5'- gACCUGGGCCUCGAUCCGAAUCGCGUCu -3' miRNA: 3'- -UGGACCCGGAGCUAGGCUUAGCGCAG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home