miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24141 5' -56.3 NC_005263.2 + 37413 0.66 0.641217
Target:  5'- cGUAUCGCGGUCgCGaaguggucggcuauGCCGAcCU-GGGCc -3'
miRNA:   3'- -CAUGGCGCUAG-GC--------------UGGCUuGAgCCCG- -5'
24141 5' -56.3 NC_005263.2 + 24570 0.66 0.633589
Target:  5'- -cGCCaCGGUCgGcacGCCGAAUaucaugUCGGGCg -3'
miRNA:   3'- caUGGcGCUAGgC---UGGCUUG------AGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 4695 0.66 0.644485
Target:  5'- cGUGCCGuCGGcgagcuUCUuGCCGGACUcgucCGGGUa -3'
miRNA:   3'- -CAUGGC-GCU------AGGcUGGCUUGA----GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 18152 0.67 0.568511
Target:  5'- -cGCCGCuGcgCaGGCCGAuCUCuGGGCa -3'
miRNA:   3'- caUGGCG-CuaGgCUGGCUuGAG-CCCG- -5'
24141 5' -56.3 NC_005263.2 + 21071 0.67 0.568511
Target:  5'- -gGCCGCGcAUCCuGCuCGAACgacacaaggugUGGGCg -3'
miRNA:   3'- caUGGCGC-UAGGcUG-GCUUGa----------GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 19111 0.67 0.611804
Target:  5'- cUGCCGguCGG-CCGcGCCGAGCgcaucgcCGGGCg -3'
miRNA:   3'- cAUGGC--GCUaGGC-UGGCUUGa------GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 19161 0.67 0.590088
Target:  5'- -gACCGUGcAUCCG-CCGGcgcgGCUCGucGGCc -3'
miRNA:   3'- caUGGCGC-UAGGCuGGCU----UGAGC--CCG- -5'
24141 5' -56.3 NC_005263.2 + 20642 0.67 0.568511
Target:  5'- uGUGCU-CGAUCCGGCagaaGGugACaUCGGGCu -3'
miRNA:   3'- -CAUGGcGCUAGGCUGg---CU--UG-AGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 19151 0.67 0.611804
Target:  5'- --uCCGCGAcaccgaUCCGACCGcaugGGC-CGuGGCg -3'
miRNA:   3'- cauGGCGCU------AGGCUGGC----UUGaGC-CCG- -5'
24141 5' -56.3 NC_005263.2 + 5135 0.67 0.611804
Target:  5'- uUGuuGCGAUCCuGGuggugcagcCCGGACgcaCGGGCc -3'
miRNA:   3'- cAUggCGCUAGG-CU---------GGCUUGa--GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 18843 0.67 0.586841
Target:  5'- uUGCCGCG-UUCGACCGcGugaacaacgcgugcCUCGGcGCg -3'
miRNA:   3'- cAUGGCGCuAGGCUGGCuU--------------GAGCC-CG- -5'
24141 5' -56.3 NC_005263.2 + 32418 0.67 0.590088
Target:  5'- -cGCUGCGAgcucgCCGGCCGcuCUUGG-Ca -3'
miRNA:   3'- caUGGCGCUa----GGCUGGCuuGAGCCcG- -5'
24141 5' -56.3 NC_005263.2 + 37901 0.67 0.579278
Target:  5'- aUGCCGUuucCCGAaaaCGAACagCGGGCg -3'
miRNA:   3'- cAUGGCGcuaGGCUg--GCUUGa-GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 39811 0.68 0.505222
Target:  5'- cUGCagugGaCGAUCCGACCGAcgccGCUCGcGCu -3'
miRNA:   3'- cAUGg---C-GCUAGGCUGGCU----UGAGCcCG- -5'
24141 5' -56.3 NC_005263.2 + 2765 0.68 0.509355
Target:  5'- --gUCGCGA-CCGACCGGcaucacgaccucgcgAC-CGGGCu -3'
miRNA:   3'- cauGGCGCUaGGCUGGCU---------------UGaGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 41135 0.68 0.556725
Target:  5'- -cGCCGCGAguaUCCGgaaACCGGcguucgcGCggcgUGGGCg -3'
miRNA:   3'- caUGGCGCU---AGGC---UGGCU-------UGa---GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 14216 0.68 0.547136
Target:  5'- cGUGCCGUucgcgcgcaacGaAUCCGACCcguGGCgugCGGGCu -3'
miRNA:   3'- -CAUGGCG-----------C-UAGGCUGGc--UUGa--GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 30596 0.68 0.536543
Target:  5'- uGUACagCGCGAUCaGAUCaucCUCGGGCa -3'
miRNA:   3'- -CAUG--GCGCUAGgCUGGcuuGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 42852 0.68 0.51558
Target:  5'- cGUACCGCaucacGUUCGACCcGGC-CGGGUu -3'
miRNA:   3'- -CAUGGCGc----UAGGCUGGcUUGaGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 15738 0.68 0.51558
Target:  5'- -cGCUGuCGGacuacCCGACCGAGCa-GGGCg -3'
miRNA:   3'- caUGGC-GCUa----GGCUGGCUUGagCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.