Results 21 - 40 of 69 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 36940 | 0.69 | 0.474715 |
Target: 5'- -aACCGCGugucgcagCCGGCCagcuaGGCUgCGGGCg -3' miRNA: 3'- caUGGCGCua------GGCUGGc----UUGA-GCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 30765 | 0.69 | 0.484784 |
Target: 5'- -gACCGCGAUgCCGAacgucgaagccaCCGGcGC-CGGGCc -3' miRNA: 3'- caUGGCGCUA-GGCU------------GGCU-UGaGCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 1951 | 0.69 | 0.484784 |
Target: 5'- -cGCCGCccuuccauucGAUCCaGCCccGCUCGGGUg -3' miRNA: 3'- caUGGCG----------CUAGGcUGGcuUGAGCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 39811 | 0.68 | 0.505222 |
Target: 5'- cUGCagugGaCGAUCCGACCGAcgccGCUCGcGCu -3' miRNA: 3'- cAUGg---C-GCUAGGCUGGCU----UGAGCcCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 2765 | 0.68 | 0.509355 |
Target: 5'- --gUCGCGA-CCGACCGGcaucacgaccucgcgAC-CGGGCu -3' miRNA: 3'- cauGGCGCUaGGCUGGCU---------------UGaGCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 42852 | 0.68 | 0.51558 |
Target: 5'- cGUACCGCaucacGUUCGACCcGGC-CGGGUu -3' miRNA: 3'- -CAUGGCGc----UAGGCUGGcUUGaGCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 15738 | 0.68 | 0.51558 |
Target: 5'- -cGCUGuCGGacuacCCGACCGAGCa-GGGCg -3' miRNA: 3'- caUGGC-GCUa----GGCUGGCUUGagCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 12578 | 0.68 | 0.526022 |
Target: 5'- --cCCGCGcgCCG-CCGGGCgcagUCGGcGCg -3' miRNA: 3'- cauGGCGCuaGGCuGGCUUG----AGCC-CG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 30596 | 0.68 | 0.536543 |
Target: 5'- uGUACagCGCGAUCaGAUCaucCUCGGGCa -3' miRNA: 3'- -CAUG--GCGCUAGgCUGGcuuGAGCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 14216 | 0.68 | 0.547136 |
Target: 5'- cGUGCCGUucgcgcgcaacGaAUCCGACCcguGGCgugCGGGCu -3' miRNA: 3'- -CAUGGCG-----------C-UAGGCUGGc--UUGa--GCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 20161 | 0.68 | 0.547136 |
Target: 5'- --uCCGCGccGUCCGGCucaucgacgaCGAGCgcgcCGGGCg -3' miRNA: 3'- cauGGCGC--UAGGCUG----------GCUUGa---GCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 9431 | 0.68 | 0.547136 |
Target: 5'- cGUGCCGCccGggCCGAUC-AAgaCGGGCa -3' miRNA: 3'- -CAUGGCG--CuaGGCUGGcUUgaGCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 41135 | 0.68 | 0.556725 |
Target: 5'- -cGCCGCGAguaUCCGgaaACCGGcguucgcGCggcgUGGGCg -3' miRNA: 3'- caUGGCGCU---AGGC---UGGCU-------UGa---GCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 9532 | 0.68 | 0.557794 |
Target: 5'- -gGCCGUGcgCggcagCGACCGAcgcggcGCUCGcGGCu -3' miRNA: 3'- caUGGCGCuaG-----GCUGGCU------UGAGC-CCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 41329 | 0.68 | 0.557794 |
Target: 5'- -gGCgGCGAcuUCgacgaGGCCGAGCUCGcccGGCg -3' miRNA: 3'- caUGgCGCU--AGg----CUGGCUUGAGC---CCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 6961 | 0.68 | 0.557794 |
Target: 5'- -cGCCGCGcgaacgCCGGuuuCCGGAuCUCGcGGCg -3' miRNA: 3'- caUGGCGCua----GGCU---GGCUU-GAGC-CCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 18152 | 0.67 | 0.568511 |
Target: 5'- -cGCCGCuGcgCaGGCCGAuCUCuGGGCa -3' miRNA: 3'- caUGGCG-CuaGgCUGGCUuGAG-CCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 20642 | 0.67 | 0.568511 |
Target: 5'- uGUGCU-CGAUCCGGCagaaGGugACaUCGGGCu -3' miRNA: 3'- -CAUGGcGCUAGGCUGg---CU--UG-AGCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 21071 | 0.67 | 0.568511 |
Target: 5'- -gGCCGCGcAUCCuGCuCGAACgacacaaggugUGGGCg -3' miRNA: 3'- caUGGCGC-UAGGcUG-GCUUGa----------GCCCG- -5' |
|||||||
24141 | 5' | -56.3 | NC_005263.2 | + | 37901 | 0.67 | 0.579278 |
Target: 5'- aUGCCGUuucCCGAaaaCGAACagCGGGCg -3' miRNA: 3'- cAUGGCGcuaGGCUg--GCUUGa-GCCCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home