miRNA display CGI


Results 41 - 60 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24141 5' -56.3 NC_005263.2 + 26643 0.66 0.637948
Target:  5'- uUGCCaGUGGcgCCGcagcgguggcgcuuCCGGAUUCGGGCa -3'
miRNA:   3'- cAUGG-CGCUa-GGCu-------------GGCUUGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 28720 0.66 0.666232
Target:  5'- cGUACUGCGcgCCG-CCGAgGCUgacGGCa -3'
miRNA:   3'- -CAUGGCGCuaGGCuGGCU-UGAgc-CCG- -5'
24141 5' -56.3 NC_005263.2 + 28951 0.69 0.445156
Target:  5'- -gGCCcauGCGGUCgGAUCGGugucgcggaAUUCGGGCg -3'
miRNA:   3'- caUGG---CGCUAGgCUGGCU---------UGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 30596 0.68 0.536543
Target:  5'- uGUACagCGCGAUCaGAUCaucCUCGGGCa -3'
miRNA:   3'- -CAUG--GCGCUAGgCUGGcuuGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 30765 0.69 0.484784
Target:  5'- -gACCGCGAUgCCGAacgucgaagccaCCGGcGC-CGGGCc -3'
miRNA:   3'- caUGGCGCUA-GGCU------------GGCU-UGaGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 32014 0.66 0.642306
Target:  5'- -aGCUGCGcgggugaacagCCGGCCGAucugcucgaUCGGGCc -3'
miRNA:   3'- caUGGCGCua---------GGCUGGCUug-------AGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 32418 0.67 0.590088
Target:  5'- -cGCUGCGAgcucgCCGGCCGcuCUUGG-Ca -3'
miRNA:   3'- caUGGCGCUa----GGCUGGCuuGAGCCcG- -5'
24141 5' -56.3 NC_005263.2 + 33989 0.66 0.666232
Target:  5'- -aGCgGCGAggCCGGCCGuguuggcuGCgUCGcGGCg -3'
miRNA:   3'- caUGgCGCUa-GGCUGGCu-------UG-AGC-CCG- -5'
24141 5' -56.3 NC_005263.2 + 36117 0.66 0.63141
Target:  5'- -gGCCGCGucguacuugcgCuCGAUCGAGCgcaaguaCGGGCg -3'
miRNA:   3'- caUGGCGCua---------G-GCUGGCUUGa------GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 36940 0.69 0.474715
Target:  5'- -aACCGCGugucgcagCCGGCCagcuaGGCUgCGGGCg -3'
miRNA:   3'- caUGGCGCua------GGCUGGc----UUGA-GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 37413 0.66 0.641217
Target:  5'- cGUAUCGCGGUCgCGaaguggucggcuauGCCGAcCU-GGGCc -3'
miRNA:   3'- -CAUGGCGCUAG-GC--------------UGGCUuGAgCCCG- -5'
24141 5' -56.3 NC_005263.2 + 37479 1.12 0.000511
Target:  5'- uGUACCGCGAUCCGACCGAACUCGGGCa -3'
miRNA:   3'- -CAUGGCGCUAGGCUGGCUUGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 37872 0.66 0.666232
Target:  5'- aGUACCagacccagaacGCGAUCgCGuCUGGACUCGaGCc -3'
miRNA:   3'- -CAUGG-----------CGCUAG-GCuGGCUUGAGCcCG- -5'
24141 5' -56.3 NC_005263.2 + 37901 0.67 0.579278
Target:  5'- aUGCCGUuucCCGAaaaCGAACagCGGGCg -3'
miRNA:   3'- cAUGGCGcuaGGCUg--GCUUGa-GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 38670 0.66 0.677063
Target:  5'- gGUGcCCGUcuuGAUCgGcCCGGGCggcaCGGGCa -3'
miRNA:   3'- -CAU-GGCG---CUAGgCuGGCUUGa---GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 39247 0.7 0.398286
Target:  5'- -gGCCGCGuAUCCcgucGGCCGAGCUgCGcGCg -3'
miRNA:   3'- caUGGCGC-UAGG----CUGGCUUGA-GCcCG- -5'
24141 5' -56.3 NC_005263.2 + 39811 0.68 0.505222
Target:  5'- cUGCagugGaCGAUCCGACCGAcgccGCUCGcGCu -3'
miRNA:   3'- cAUGg---C-GCUAGGCUGGCU----UGAGCcCG- -5'
24141 5' -56.3 NC_005263.2 + 40417 0.71 0.380444
Target:  5'- -cGCCGCGcggCCGACuCGAACccgguugaagaCGGGCa -3'
miRNA:   3'- caUGGCGCua-GGCUG-GCUUGa----------GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 41135 0.68 0.556725
Target:  5'- -cGCCGCGAguaUCCGgaaACCGGcguucgcGCggcgUGGGCg -3'
miRNA:   3'- caUGGCGCU---AGGC---UGGCU-------UGa---GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 41329 0.68 0.557794
Target:  5'- -gGCgGCGAcuUCgacgaGGCCGAGCUCGcccGGCg -3'
miRNA:   3'- caUGgCGCU--AGg----CUGGCUUGAGC---CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.