miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24141 5' -56.3 NC_005263.2 + 36117 0.66 0.63141
Target:  5'- -gGCCGCGucguacuugcgCuCGAUCGAGCgcaaguaCGGGCg -3'
miRNA:   3'- caUGGCGCua---------G-GCUGGCUUGa------GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 33989 0.66 0.666232
Target:  5'- -aGCgGCGAggCCGGCCGuguuggcuGCgUCGcGGCg -3'
miRNA:   3'- caUGgCGCUa-GGCUGGCu-------UG-AGC-CCG- -5'
24141 5' -56.3 NC_005263.2 + 32418 0.67 0.590088
Target:  5'- -cGCUGCGAgcucgCCGGCCGcuCUUGG-Ca -3'
miRNA:   3'- caUGGCGCUa----GGCUGGCuuGAGCCcG- -5'
24141 5' -56.3 NC_005263.2 + 32014 0.66 0.642306
Target:  5'- -aGCUGCGcgggugaacagCCGGCCGAucugcucgaUCGGGCc -3'
miRNA:   3'- caUGGCGCua---------GGCUGGCUug-------AGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 30765 0.69 0.484784
Target:  5'- -gACCGCGAUgCCGAacgucgaagccaCCGGcGC-CGGGCc -3'
miRNA:   3'- caUGGCGCUA-GGCU------------GGCU-UGaGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 30596 0.68 0.536543
Target:  5'- uGUACagCGCGAUCaGAUCaucCUCGGGCa -3'
miRNA:   3'- -CAUG--GCGCUAGgCUGGcuuGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 28951 0.69 0.445156
Target:  5'- -gGCCcauGCGGUCgGAUCGGugucgcggaAUUCGGGCg -3'
miRNA:   3'- caUGG---CGCUAGgCUGGCU---------UGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 28720 0.66 0.666232
Target:  5'- cGUACUGCGcgCCG-CCGAgGCUgacGGCa -3'
miRNA:   3'- -CAUGGCGCuaGGCuGGCU-UGAgc-CCG- -5'
24141 5' -56.3 NC_005263.2 + 26643 0.66 0.637948
Target:  5'- uUGCCaGUGGcgCCGcagcgguggcgcuuCCGGAUUCGGGCa -3'
miRNA:   3'- cAUGG-CGCUa-GGCu-------------GGCUUGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 25317 0.66 0.677063
Target:  5'- -gACCGC--UUCGACaccauguucaCGAGcCUCGGGCa -3'
miRNA:   3'- caUGGCGcuAGGCUG----------GCUU-GAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 25227 0.66 0.666232
Target:  5'- -cGCCGUgccGAUcCCGGCCGAcgaauccgucacGCUCGG-Cg -3'
miRNA:   3'- caUGGCG---CUA-GGCUGGCU------------UGAGCCcG- -5'
24141 5' -56.3 NC_005263.2 + 25103 0.7 0.407406
Target:  5'- aUACCGCGAUCUGcgaaacGCUGAugUUGaGGUu -3'
miRNA:   3'- cAUGGCGCUAGGC------UGGCUugAGC-CCG- -5'
24141 5' -56.3 NC_005263.2 + 25056 0.66 0.665146
Target:  5'- -aACaCGaCGAUCCcgacgucGACCGGcaAUUCGGGUg -3'
miRNA:   3'- caUG-GC-GCUAGG-------CUGGCU--UGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 24570 0.66 0.633589
Target:  5'- -cGCCaCGGUCgGcacGCCGAAUaucaugUCGGGCg -3'
miRNA:   3'- caUGGcGCUAGgC---UGGCUUG------AGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 24084 0.66 0.633589
Target:  5'- --gUCGacCGAUCCGGCCGGcggcggcuacguGC-CGGGCu -3'
miRNA:   3'- cauGGC--GCUAGGCUGGCU------------UGaGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 23797 0.66 0.665146
Target:  5'- -gACCGcCGAUgCGACgcgcgCGAgccaaucGCUCGGGUu -3'
miRNA:   3'- caUGGC-GCUAgGCUG-----GCU-------UGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 23017 0.66 0.644485
Target:  5'- -gAUCGCGGUauGACCGAcuauCUCGGccGCa -3'
miRNA:   3'- caUGGCGCUAggCUGGCUu---GAGCC--CG- -5'
24141 5' -56.3 NC_005263.2 + 22132 0.66 0.655369
Target:  5'- -aAgCGCGAUC--GCCGGACg-GGGCg -3'
miRNA:   3'- caUgGCGCUAGgcUGGCUUGagCCCG- -5'
24141 5' -56.3 NC_005263.2 + 21808 0.74 0.251242
Target:  5'- --cCCGCGAUCacaGACCGGGCUCaucgauuGGCg -3'
miRNA:   3'- cauGGCGCUAGg--CUGGCUUGAGc------CCG- -5'
24141 5' -56.3 NC_005263.2 + 21400 0.71 0.346398
Target:  5'- cUGCCGCaggCCGGCCu-GCUCGGcGCa -3'
miRNA:   3'- cAUGGCGcuaGGCUGGcuUGAGCC-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.