miRNA display CGI


Results 21 - 40 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24141 5' -56.3 NC_005263.2 + 20161 0.68 0.547136
Target:  5'- --uCCGCGccGUCCGGCucaucgacgaCGAGCgcgcCGGGCg -3'
miRNA:   3'- cauGGCGC--UAGGCUG----------GCUUGa---GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 44903 0.7 0.435533
Target:  5'- -gGCC-CGAUCUGGCCGcGCUCGccgacgcgcagcGGCa -3'
miRNA:   3'- caUGGcGCUAGGCUGGCuUGAGC------------CCG- -5'
24141 5' -56.3 NC_005263.2 + 47226 0.66 0.651017
Target:  5'- -cGCCGCGcugaacgaagcgCCGGCCGGcACgaCGGGUa -3'
miRNA:   3'- caUGGCGCua----------GGCUGGCU-UGa-GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 9532 0.68 0.557794
Target:  5'- -gGCCGUGcgCggcagCGACCGAcgcggcGCUCGcGGCu -3'
miRNA:   3'- caUGGCGCuaG-----GCUGGCU------UGAGC-CCG- -5'
24141 5' -56.3 NC_005263.2 + 41868 0.7 0.435533
Target:  5'- -gACCGCGc-CUGGCCgcGAGCgaUCGGGCa -3'
miRNA:   3'- caUGGCGCuaGGCUGG--CUUG--AGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 4695 0.66 0.644485
Target:  5'- cGUGCCGuCGGcgagcuUCUuGCCGGACUcgucCGGGUa -3'
miRNA:   3'- -CAUGGC-GCU------AGGcUGGCUUGA----GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 25103 0.7 0.407406
Target:  5'- aUACCGCGAUCUGcgaaacGCUGAugUUGaGGUu -3'
miRNA:   3'- cAUGGCGCUAGGC------UGGCUugAGC-CCG- -5'
24141 5' -56.3 NC_005263.2 + 39247 0.7 0.398286
Target:  5'- -gGCCGCGuAUCCcgucGGCCGAGCUgCGcGCg -3'
miRNA:   3'- caUGGCGC-UAGG----CUGGCUUGA-GCcCG- -5'
24141 5' -56.3 NC_005263.2 + 18152 0.67 0.568511
Target:  5'- -cGCCGCuGcgCaGGCCGAuCUCuGGGCa -3'
miRNA:   3'- caUGGCG-CuaGgCUGGCUuGAG-CCCG- -5'
24141 5' -56.3 NC_005263.2 + 28720 0.66 0.666232
Target:  5'- cGUACUGCGcgCCG-CCGAgGCUgacGGCa -3'
miRNA:   3'- -CAUGGCGCuaGGCuGGCU-UGAgc-CCG- -5'
24141 5' -56.3 NC_005263.2 + 30765 0.69 0.484784
Target:  5'- -gACCGCGAUgCCGAacgucgaagccaCCGGcGC-CGGGCc -3'
miRNA:   3'- caUGGCGCUA-GGCU------------GGCU-UGaGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 28951 0.69 0.445156
Target:  5'- -gGCCcauGCGGUCgGAUCGGugucgcggaAUUCGGGCg -3'
miRNA:   3'- caUGG---CGCUAGgCUGGCU---------UGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 19111 0.67 0.611804
Target:  5'- cUGCCGguCGG-CCGcGCCGAGCgcaucgcCGGGCg -3'
miRNA:   3'- cAUGGC--GCUaGGC-UGGCUUGa------GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 21258 0.66 0.666232
Target:  5'- -aGCCGCGcagugCUG-CUcuuggGGGCUCGGGCa -3'
miRNA:   3'- caUGGCGCua---GGCuGG-----CUUGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 5135 0.67 0.611804
Target:  5'- uUGuuGCGAUCCuGGuggugcagcCCGGACgcaCGGGCc -3'
miRNA:   3'- cAUggCGCUAGG-CU---------GGCUUGa--GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 19151 0.67 0.611804
Target:  5'- --uCCGCGAcaccgaUCCGACCGcaugGGC-CGuGGCg -3'
miRNA:   3'- cauGGCGCU------AGGCUGGC----UUGaGC-CCG- -5'
24141 5' -56.3 NC_005263.2 + 44371 0.71 0.389298
Target:  5'- cGUACgCGCuGAUCCGGCCcGGCgugcgCGaGGCg -3'
miRNA:   3'- -CAUG-GCG-CUAGGCUGGcUUGa----GC-CCG- -5'
24141 5' -56.3 NC_005263.2 + 23017 0.66 0.644485
Target:  5'- -gAUCGCGGUauGACCGAcuauCUCGGccGCa -3'
miRNA:   3'- caUGGCGCUAggCUGGCUu---GAGCC--CG- -5'
24141 5' -56.3 NC_005263.2 + 45367 0.69 0.474715
Target:  5'- -gGCCGCGAUCuCGGCUGuga-CGGGg -3'
miRNA:   3'- caUGGCGCUAG-GCUGGCuugaGCCCg -5'
24141 5' -56.3 NC_005263.2 + 36940 0.69 0.474715
Target:  5'- -aACCGCGugucgcagCCGGCCagcuaGGCUgCGGGCg -3'
miRNA:   3'- caUGGCGCua------GGCUGGc----UUGA-GCCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.