miRNA display CGI


Results 1 - 20 of 69 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24141 5' -56.3 NC_005263.2 + 1156 0.74 0.232591
Target:  5'- -cACCGCGuAUCCGAUCGccucggcuuGCuUCGGGCu -3'
miRNA:   3'- caUGGCGC-UAGGCUGGCu--------UG-AGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 1951 0.69 0.484784
Target:  5'- -cGCCGCccuuccauucGAUCCaGCCccGCUCGGGUg -3'
miRNA:   3'- caUGGCG----------CUAGGcUGGcuUGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 2636 0.72 0.338235
Target:  5'- -gAUCGCGAUCgGcacguucgcGCCGGGCUCGaGGUg -3'
miRNA:   3'- caUGGCGCUAGgC---------UGGCUUGAGC-CCG- -5'
24141 5' -56.3 NC_005263.2 + 2765 0.68 0.509355
Target:  5'- --gUCGCGA-CCGACCGGcaucacgaccucgcgAC-CGGGCu -3'
miRNA:   3'- cauGGCGCUaGGCUGGCU---------------UGaGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 3211 0.75 0.204107
Target:  5'- -cGCgGCcagGAUCgGGCCGAcCUCGGGCg -3'
miRNA:   3'- caUGgCG---CUAGgCUGGCUuGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 4695 0.66 0.644485
Target:  5'- cGUGCCGuCGGcgagcuUCUuGCCGGACUcgucCGGGUa -3'
miRNA:   3'- -CAUGGC-GCU------AGGcUGGCUUGA----GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 4957 0.71 0.363144
Target:  5'- uGUACCaggGCGcaaUGGCCGAGCcuUCGGGCa -3'
miRNA:   3'- -CAUGG---CGCuagGCUGGCUUG--AGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 5135 0.67 0.611804
Target:  5'- uUGuuGCGAUCCuGGuggugcagcCCGGACgcaCGGGCc -3'
miRNA:   3'- cAUggCGCUAGG-CU---------GGCUUGa--GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 6452 0.66 0.666232
Target:  5'- cUGCCGCcaGAgcaCGAgCGAGCgcgUGGGCc -3'
miRNA:   3'- cAUGGCG--CUag-GCUgGCUUGa--GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 6761 0.72 0.330212
Target:  5'- -cAUCGCGcgCCGGgCGAGCUCGGc- -3'
miRNA:   3'- caUGGCGCuaGGCUgGCUUGAGCCcg -5'
24141 5' -56.3 NC_005263.2 + 6961 0.68 0.557794
Target:  5'- -cGCCGCGcgaacgCCGGuuuCCGGAuCUCGcGGCg -3'
miRNA:   3'- caUGGCGCua----GGCU---GGCUU-GAGC-CCG- -5'
24141 5' -56.3 NC_005263.2 + 9431 0.68 0.547136
Target:  5'- cGUGCCGCccGggCCGAUC-AAgaCGGGCa -3'
miRNA:   3'- -CAUGGCG--CuaGGCUGGcUUgaGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 9532 0.68 0.557794
Target:  5'- -gGCCGUGcgCggcagCGACCGAcgcggcGCUCGcGGCu -3'
miRNA:   3'- caUGGCGCuaG-----GCUGGCU------UGAGC-CCG- -5'
24141 5' -56.3 NC_005263.2 + 10186 0.71 0.346398
Target:  5'- -aAUCGCGAgcaggCCGaagcgcucGCCGGcCUCGGGCu -3'
miRNA:   3'- caUGGCGCUa----GGC--------UGGCUuGAGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 10781 0.66 0.677063
Target:  5'- cUGCgCGCGGUCUGcuugUCGAAUgcgaaacauacuUCGGGCa -3'
miRNA:   3'- cAUG-GCGCUAGGCu---GGCUUG------------AGCCCG- -5'
24141 5' -56.3 NC_005263.2 + 12578 0.68 0.526022
Target:  5'- --cCCGCGcgCCG-CCGGGCgcagUCGGcGCg -3'
miRNA:   3'- cauGGCGCuaGGCuGGCUUG----AGCC-CG- -5'
24141 5' -56.3 NC_005263.2 + 14216 0.68 0.547136
Target:  5'- cGUGCCGUucgcgcgcaacGaAUCCGACCcguGGCgugCGGGCu -3'
miRNA:   3'- -CAUGGCG-----------C-UAGGCUGGc--UUGa--GCCCG- -5'
24141 5' -56.3 NC_005263.2 + 14641 0.66 0.644485
Target:  5'- -gGCuCGUGAUCacgcuGACCGAguugccagcGCUCGuGGCc -3'
miRNA:   3'- caUG-GCGCUAGg----CUGGCU---------UGAGC-CCG- -5'
24141 5' -56.3 NC_005263.2 + 15738 0.68 0.51558
Target:  5'- -cGCUGuCGGacuacCCGACCGAGCa-GGGCg -3'
miRNA:   3'- caUGGC-GCUa----GGCUGGCUUGagCCCG- -5'
24141 5' -56.3 NC_005263.2 + 18152 0.67 0.568511
Target:  5'- -cGCCGCuGcgCaGGCCGAuCUCuGGGCa -3'
miRNA:   3'- caUGGCG-CuaGgCUGGCUuGAG-CCCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.