miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24142 3' -53.9 NC_005263.2 + 26950 0.67 0.674851
Target:  5'- --cGUGGCgUAGCCGCcggGUGUCggacuGCAGUc -3'
miRNA:   3'- cuuCGCCGaAUUGGCG---CACAG-----CGUCG- -5'
24142 3' -53.9 NC_005263.2 + 37843 0.67 0.674851
Target:  5'- cGAcGCGGCguuucgcgAACCGCGUG-CGCc-- -3'
miRNA:   3'- -CUuCGCCGaa------UUGGCGCACaGCGucg -5'
24142 3' -53.9 NC_005263.2 + 24867 0.67 0.664759
Target:  5'- -cGGCGGCUacggccaggauacggGACCGCaaggcGUCGguGCa -3'
miRNA:   3'- cuUCGCCGAa--------------UUGGCGca---CAGCguCG- -5'
24142 3' -53.9 NC_005263.2 + 2886 0.67 0.663636
Target:  5'- -cAGCGGCgaggcugaugUUGGCCGagaCGUGcugCGCGGCc -3'
miRNA:   3'- cuUCGCCG----------AAUUGGC---GCACa--GCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 44896 0.67 0.661388
Target:  5'- cGAGGuCGGCccgaucUGGCCGCGcucgccgacgCGCAGCg -3'
miRNA:   3'- -CUUC-GCCGa-----AUUGGCGCaca-------GCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 30243 0.67 0.65239
Target:  5'- --cGCGGCgaagcGugCGCGguaGUCGuCGGCg -3'
miRNA:   3'- cuuCGCCGaa---UugGCGCa--CAGC-GUCG- -5'
24142 3' -53.9 NC_005263.2 + 35869 0.67 0.65239
Target:  5'- --uGCGGCagccccaaauacUUcGCCGCGUugauGUCGguGCg -3'
miRNA:   3'- cuuCGCCG------------AAuUGGCGCA----CAGCguCG- -5'
24142 3' -53.9 NC_005263.2 + 1171 0.68 0.641124
Target:  5'- --cGCGGCgacuuguGCCuCGUGcugCGCGGCa -3'
miRNA:   3'- cuuCGCCGaau----UGGcGCACa--GCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 11795 0.68 0.62985
Target:  5'- ---aUGGCgcagGACguCGCGUGUCGCuGCa -3'
miRNA:   3'- cuucGCCGaa--UUG--GCGCACAGCGuCG- -5'
24142 3' -53.9 NC_005263.2 + 1285 0.68 0.618577
Target:  5'- cGGAGCGGCgcgaaaGAUCGCGcucacGUUGCGcGCa -3'
miRNA:   3'- -CUUCGCCGaa----UUGGCGCa----CAGCGU-CG- -5'
24142 3' -53.9 NC_005263.2 + 14557 0.68 0.607317
Target:  5'- gGAAGC-GCUUAgccgGCCGCGUG-C-CGGCu -3'
miRNA:   3'- -CUUCGcCGAAU----UGGCGCACaGcGUCG- -5'
24142 3' -53.9 NC_005263.2 + 35469 0.68 0.607317
Target:  5'- -cAGCgGGCgccgaAACCGaCGUcGUCGCAGUu -3'
miRNA:   3'- cuUCG-CCGaa---UUGGC-GCA-CAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 40945 0.69 0.583757
Target:  5'- -cAGCGGCgaUGGCCGCGcaauaggGUCGCuugacauAGCc -3'
miRNA:   3'- cuUCGCCGa-AUUGGCGCa------CAGCG-------UCG- -5'
24142 3' -53.9 NC_005263.2 + 28080 0.69 0.573711
Target:  5'- --cGCGGCacgaucCCGUGUGUuggCGCGGCc -3'
miRNA:   3'- cuuCGCCGaauu--GGCGCACA---GCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 28957 0.69 0.573711
Target:  5'- --uGCGGUcgGAUCG-GUGUCGCGGa -3'
miRNA:   3'- cuuCGCCGaaUUGGCgCACAGCGUCg -5'
24142 3' -53.9 NC_005263.2 + 17383 0.69 0.570372
Target:  5'- uGAAGCugucugccGGCgcGGCCGCGcgccuggcgggcggUGUCGCAGg -3'
miRNA:   3'- -CUUCG--------CCGaaUUGGCGC--------------ACAGCGUCg -5'
24142 3' -53.9 NC_005263.2 + 21103 0.69 0.540555
Target:  5'- uGGGCGGCgacgAGCC-CGg--CGCAGCg -3'
miRNA:   3'- cUUCGCCGaa--UUGGcGCacaGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 2841 0.69 0.540555
Target:  5'- uGAAuGCGGCUUcGAUCaGCG--UCGCAGCg -3'
miRNA:   3'- -CUU-CGCCGAA-UUGG-CGCacAGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 17814 0.69 0.529642
Target:  5'- aAGGCGGCcgaggauGCCGCGcgcggcccgauUG-CGCAGCg -3'
miRNA:   3'- cUUCGCCGaau----UGGCGC-----------ACaGCGUCG- -5'
24142 3' -53.9 NC_005263.2 + 9124 0.7 0.51881
Target:  5'- uGAAGCGGCgauuGCCGguCGcGUCGUGGUu -3'
miRNA:   3'- -CUUCGCCGaau-UGGC--GCaCAGCGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.