miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24143 3' -57.1 NC_005263.2 + 21577 0.66 0.56291
Target:  5'- --cGCCGCgUGCUCGcCGCcgGCGuCGAc- -3'
miRNA:   3'- uaaCGGCG-ACGAGCaGCG--CGU-GCUag -5'
24143 3' -57.1 NC_005263.2 + 22114 0.66 0.551987
Target:  5'- -cUGCCGCcgGCaCGcUGCaaGCGCGAUCg -3'
miRNA:   3'- uaACGGCGa-CGaGCaGCG--CGUGCUAG- -5'
24143 3' -57.1 NC_005263.2 + 30796 0.66 0.551987
Target:  5'- --cGCUGCUGCUCGgcggcgaCGUGCucgGCGGa- -3'
miRNA:   3'- uaaCGGCGACGAGCa------GCGCG---UGCUag -5'
24143 3' -57.1 NC_005263.2 + 41346 0.66 0.551987
Target:  5'- --gGCCGa-GCUCGcCcgGCGCGCGAUg -3'
miRNA:   3'- uaaCGGCgaCGAGCaG--CGCGUGCUAg -5'
24143 3' -57.1 NC_005263.2 + 37581 0.66 0.545465
Target:  5'- -gUG-CGCUGCUCGUgcgucagcucgccgaCGCGCugGuuuAUCa -3'
miRNA:   3'- uaACgGCGACGAGCA---------------GCGCGugC---UAG- -5'
24143 3' -57.1 NC_005263.2 + 10561 0.66 0.54113
Target:  5'- --gGCCGuCUGCgCGaCGUGCuuGAUCa -3'
miRNA:   3'- uaaCGGC-GACGaGCaGCGCGugCUAG- -5'
24143 3' -57.1 NC_005263.2 + 19172 0.66 0.54113
Target:  5'- --cGCCgGCgcgGCUCGUCGgcCGCGCGu-- -3'
miRNA:   3'- uaaCGG-CGa--CGAGCAGC--GCGUGCuag -5'
24143 3' -57.1 NC_005263.2 + 20541 0.66 0.530344
Target:  5'- -cUGCCGCUGCUCGaagaaaCG-GaCACGAa- -3'
miRNA:   3'- uaACGGCGACGAGCa-----GCgC-GUGCUag -5'
24143 3' -57.1 NC_005263.2 + 33145 0.66 0.530344
Target:  5'- --cGCUGCUG-UCGUucccCGCGCugaACGAUCc -3'
miRNA:   3'- uaaCGGCGACgAGCA----GCGCG---UGCUAG- -5'
24143 3' -57.1 NC_005263.2 + 33359 0.66 0.527124
Target:  5'- --cGCCGCUgaccugccgaaacaGUUCGU-GCGCGUGAUCa -3'
miRNA:   3'- uaaCGGCGA--------------CGAGCAgCGCGUGCUAG- -5'
24143 3' -57.1 NC_005263.2 + 9600 0.66 0.519638
Target:  5'- cAUUGCgGCaGCgcgaucaucgCGUCGCGcCACgGAUCg -3'
miRNA:   3'- -UAACGgCGaCGa---------GCAGCGC-GUG-CUAG- -5'
24143 3' -57.1 NC_005263.2 + 29173 0.66 0.509018
Target:  5'- --gGCgCGCUcgagcGCUCGUgC-CGCGCGGUCa -3'
miRNA:   3'- uaaCG-GCGA-----CGAGCA-GcGCGUGCUAG- -5'
24143 3' -57.1 NC_005263.2 + 18282 0.66 0.509018
Target:  5'- --gGCgaUGC-GCUCGUCGUGCGCGcugcAUCg -3'
miRNA:   3'- uaaCG--GCGaCGAGCAGCGCGUGC----UAG- -5'
24143 3' -57.1 NC_005263.2 + 2254 0.66 0.50585
Target:  5'- cUUGCCGUaGCgCGcCGCGCgcucggccaagguuGCGGUCa -3'
miRNA:   3'- uAACGGCGaCGaGCaGCGCG--------------UGCUAG- -5'
24143 3' -57.1 NC_005263.2 + 35232 0.67 0.498491
Target:  5'- -cUGUCGUUGUUCGgCGCGguCGAc- -3'
miRNA:   3'- uaACGGCGACGAGCaGCGCguGCUag -5'
24143 3' -57.1 NC_005263.2 + 40834 0.67 0.498491
Target:  5'- -cUGCCGCcGCUCGUCcCGaCcgacaucguugACGGUCg -3'
miRNA:   3'- uaACGGCGaCGAGCAGcGC-G-----------UGCUAG- -5'
24143 3' -57.1 NC_005263.2 + 39297 0.67 0.498491
Target:  5'- --aGCgGCcgGCaggCGcaugCGCGCGCGAUCg -3'
miRNA:   3'- uaaCGgCGa-CGa--GCa---GCGCGUGCUAG- -5'
24143 3' -57.1 NC_005263.2 + 17703 0.67 0.488061
Target:  5'- -cUGCUGCaGC-CgGUCGCGCuauccgaaGCGAUCg -3'
miRNA:   3'- uaACGGCGaCGaG-CAGCGCG--------UGCUAG- -5'
24143 3' -57.1 NC_005263.2 + 17092 0.67 0.467519
Target:  5'- --cGCCGC-GcCUCGcCGCacugcuGCACGAUCu -3'
miRNA:   3'- uaaCGGCGaC-GAGCaGCG------CGUGCUAG- -5'
24143 3' -57.1 NC_005263.2 + 37425 0.67 0.466504
Target:  5'- --gGCCGUc-CUCGUcgucauacgucggCGCGCGCGGUCu -3'
miRNA:   3'- uaaCGGCGacGAGCA-------------GCGCGUGCUAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.