miRNA display CGI


Results 1 - 20 of 218 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24144 3' -56.3 NC_005263.2 + 33821 0.66 0.665917
Target:  5'- cAUGACG-AUCGCGCUgcaucagcuuuGCCUgcgcaccccCAUCGCu -3'
miRNA:   3'- -UGCUGCuUGGCGCGG-----------CGGAa--------GUAGCG- -5'
24144 3' -56.3 NC_005263.2 + 38273 0.66 0.665917
Target:  5'- --aGCGcGCCGCGCCGUUcgUCAaCGUg -3'
miRNA:   3'- ugcUGCuUGGCGCGGCGGa-AGUaGCG- -5'
24144 3' -56.3 NC_005263.2 + 6618 0.66 0.665917
Target:  5'- gGCGGCGcGCUcgGCGCgGUCgagcaGUCGCg -3'
miRNA:   3'- -UGCUGCuUGG--CGCGgCGGaag--UAGCG- -5'
24144 3' -56.3 NC_005263.2 + 7156 0.66 0.665917
Target:  5'- aGCGACccuAUUGCGCgGCCaUCGcCGCu -3'
miRNA:   3'- -UGCUGcu-UGGCGCGgCGGaAGUaGCG- -5'
24144 3' -56.3 NC_005263.2 + 22103 0.66 0.665917
Target:  5'- -aGGCGuGACgGCuGCCGCCggCA-CGCu -3'
miRNA:   3'- ugCUGC-UUGgCG-CGGCGGaaGUaGCG- -5'
24144 3' -56.3 NC_005263.2 + 33494 0.66 0.665917
Target:  5'- cUGGCGA--CGCGagaaacUCGCCUUCAUgGCg -3'
miRNA:   3'- uGCUGCUugGCGC------GGCGGAAGUAgCG- -5'
24144 3' -56.3 NC_005263.2 + 45265 0.66 0.665917
Target:  5'- uGCGACGcuGAUCGaaGCCGCaUUCAcgUCGCc -3'
miRNA:   3'- -UGCUGC--UUGGCg-CGGCGgAAGU--AGCG- -5'
24144 3' -56.3 NC_005263.2 + 10264 0.66 0.665917
Target:  5'- cGCGAUGcgcuucgcAUCGCGCCGCU----UCGCa -3'
miRNA:   3'- -UGCUGCu-------UGGCGCGGCGGaaguAGCG- -5'
24144 3' -56.3 NC_005263.2 + 17719 0.66 0.665917
Target:  5'- cCGACGA---GCGCCGCCgcauggggC-UCGCa -3'
miRNA:   3'- uGCUGCUuggCGCGGCGGaa------GuAGCG- -5'
24144 3' -56.3 NC_005263.2 + 28988 0.66 0.665917
Target:  5'- cCGGCGAugCGCucggcgcgGCCGaCCggcagugCGUUGCg -3'
miRNA:   3'- uGCUGCUugGCG--------CGGC-GGaa-----GUAGCG- -5'
24144 3' -56.3 NC_005263.2 + 20692 0.66 0.655007
Target:  5'- gGCGGCGcgaAACCuGCGCCggucgugacgcaGCCggUCAgCGCg -3'
miRNA:   3'- -UGCUGC---UUGG-CGCGG------------CGGa-AGUaGCG- -5'
24144 3' -56.3 NC_005263.2 + 23160 0.66 0.655007
Target:  5'- --uGCGAACCGCGCacCGCCgugcCGcCGCc -3'
miRNA:   3'- ugcUGCUUGGCGCG--GCGGaa--GUaGCG- -5'
24144 3' -56.3 NC_005263.2 + 39099 0.66 0.655007
Target:  5'- gACGGCGAguaCGCGCgacucgugCGCCgugCGUCGg -3'
miRNA:   3'- -UGCUGCUug-GCGCG--------GCGGaa-GUAGCg -5'
24144 3' -56.3 NC_005263.2 + 12722 0.66 0.655007
Target:  5'- cCGGCucgguguucAGCCGCGCCGCCaccugaUCAggGCg -3'
miRNA:   3'- uGCUGc--------UUGGCGCGGCGGa-----AGUagCG- -5'
24144 3' -56.3 NC_005263.2 + 4515 0.66 0.655007
Target:  5'- cGCGACuu-CCGCGUCGUagccCAUCGUc -3'
miRNA:   3'- -UGCUGcuuGGCGCGGCGgaa-GUAGCG- -5'
24144 3' -56.3 NC_005263.2 + 46911 0.66 0.655007
Target:  5'- gACGcCGGAagaaCGCGCUGCCg----CGCa -3'
miRNA:   3'- -UGCuGCUUg---GCGCGGCGGaaguaGCG- -5'
24144 3' -56.3 NC_005263.2 + 26537 0.66 0.655007
Target:  5'- gGCGGCGAGCaCGCGgCGCUggaaCGgccagUGCu -3'
miRNA:   3'- -UGCUGCUUG-GCGCgGCGGaa--GUa----GCG- -5'
24144 3' -56.3 NC_005263.2 + 29706 0.66 0.655007
Target:  5'- gACGGCGuagcacuucuGGCCGUcgcgucgcugGCUGCCUuUCAUgGCg -3'
miRNA:   3'- -UGCUGC----------UUGGCG----------CGGCGGA-AGUAgCG- -5'
24144 3' -56.3 NC_005263.2 + 45199 0.66 0.655007
Target:  5'- uACGACG-GCCGCGCagcaCGUCUcggccaacaUCAgccUCGCc -3'
miRNA:   3'- -UGCUGCuUGGCGCG----GCGGA---------AGU---AGCG- -5'
24144 3' -56.3 NC_005263.2 + 29972 0.66 0.655007
Target:  5'- aGCGGCGGGCagcgcgaucagCGCguagaacucgGCCGgCUUCGUCGg -3'
miRNA:   3'- -UGCUGCUUG-----------GCG----------CGGCgGAAGUAGCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.