miRNA display CGI


Results 1 - 20 of 45 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24144 5' -53 NC_005263.2 + 21632 0.66 0.774875
Target:  5'- aGUGCGGCGAcGCG-CGGCGUAu---- -3'
miRNA:   3'- -CACGUUGUUcCGCuGCCGCGUcaaau -5'
24144 5' -53 NC_005263.2 + 32461 0.66 0.764288
Target:  5'- -cGCGACGAucgcguagaucGGCGuCGGCGCAu---- -3'
miRNA:   3'- caCGUUGUU-----------CCGCuGCCGCGUcaaau -5'
24144 5' -53 NC_005263.2 + 42557 0.66 0.764288
Target:  5'- -aGCGugGGGaUGugGGCGCAGg--- -3'
miRNA:   3'- caCGUugUUCcGCugCCGCGUCaaau -5'
24144 5' -53 NC_005263.2 + 27878 0.66 0.764288
Target:  5'- aGUG-GAUAAGGcCGGCGGCGCGc---- -3'
miRNA:   3'- -CACgUUGUUCC-GCUGCCGCGUcaaau -5'
24144 5' -53 NC_005263.2 + 39352 0.66 0.753553
Target:  5'- -gGCAGCcgauucgcucGGCGGCGGCGCGc---- -3'
miRNA:   3'- caCGUUGuu--------CCGCUGCCGCGUcaaau -5'
24144 5' -53 NC_005263.2 + 38320 0.66 0.753553
Target:  5'- -cGCGGCGAGGCGcccccguuCGGUGCGa---- -3'
miRNA:   3'- caCGUUGUUCCGCu-------GCCGCGUcaaau -5'
24144 5' -53 NC_005263.2 + 9199 0.66 0.742681
Target:  5'- gGUGC-GCAaacGGGCGGCGcucguacggcGCGCGGUa-- -3'
miRNA:   3'- -CACGuUGU---UCCGCUGC----------CGCGUCAaau -5'
24144 5' -53 NC_005263.2 + 46971 0.66 0.731688
Target:  5'- gGUGCAACGccguGCGcagcACGGCGCGGa--- -3'
miRNA:   3'- -CACGUUGUuc--CGC----UGCCGCGUCaaau -5'
24144 5' -53 NC_005263.2 + 8845 0.66 0.731688
Target:  5'- aUGUAGguAGGCGGCG-CGCGGg--- -3'
miRNA:   3'- cACGUUguUCCGCUGCcGCGUCaaau -5'
24144 5' -53 NC_005263.2 + 27927 0.66 0.731688
Target:  5'- -gGUAGCGgauAGGCGucaGGUGCAGUa-- -3'
miRNA:   3'- caCGUUGU---UCCGCug-CCGCGUCAaau -5'
24144 5' -53 NC_005263.2 + 23877 0.66 0.720585
Target:  5'- -cGCcGCAAGGCGAagauuucaaCGGCGCGc---- -3'
miRNA:   3'- caCGuUGUUCCGCU---------GCCGCGUcaaau -5'
24144 5' -53 NC_005263.2 + 42138 0.67 0.709386
Target:  5'- -cGCGACGAGGCGugucGCGagguGCGcCAGUUg- -3'
miRNA:   3'- caCGUUGUUCCGC----UGC----CGC-GUCAAau -5'
24144 5' -53 NC_005263.2 + 24694 0.67 0.702626
Target:  5'- -gGUAACGGcGGCGcgccgaacgugccggGCGGCGCAGg--- -3'
miRNA:   3'- caCGUUGUU-CCGC---------------UGCCGCGUCaaau -5'
24144 5' -53 NC_005263.2 + 17039 0.67 0.686753
Target:  5'- -cGCAGCGgcuGGUGGCGGCGUg----- -3'
miRNA:   3'- caCGUUGUu--CCGCUGCCGCGucaaau -5'
24144 5' -53 NC_005263.2 + 35370 0.67 0.686753
Target:  5'- -cGCccuGAUcAGGUGGCGGCGCGGc--- -3'
miRNA:   3'- caCG---UUGuUCCGCUGCCGCGUCaaau -5'
24144 5' -53 NC_005263.2 + 6840 0.67 0.686753
Target:  5'- -cGCAGCGAcGGCGAcacgacCGGCGaCAGg--- -3'
miRNA:   3'- caCGUUGUU-CCGCU------GCCGC-GUCaaau -5'
24144 5' -53 NC_005263.2 + 41743 0.67 0.686753
Target:  5'- -gGCAACuucGGGCGgcACGGCGCGa---- -3'
miRNA:   3'- caCGUUGu--UCCGC--UGCCGCGUcaaau -5'
24144 5' -53 NC_005263.2 + 32640 0.67 0.685614
Target:  5'- -gGCAGCAGcGGCcgaaagccuuccgGAUGGCGCGGg--- -3'
miRNA:   3'- caCGUUGUU-CCG-------------CUGCCGCGUCaaau -5'
24144 5' -53 NC_005263.2 + 4647 0.67 0.675343
Target:  5'- -cGCGAuCAuGGCGACGG-GCAGg--- -3'
miRNA:   3'- caCGUU-GUuCCGCUGCCgCGUCaaau -5'
24144 5' -53 NC_005263.2 + 43191 0.67 0.66389
Target:  5'- -cGCGAUGuuuuggauGGCGACGGCGCGc---- -3'
miRNA:   3'- caCGUUGUu-------CCGCUGCCGCGUcaaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.