miRNA display CGI


Results 41 - 59 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24145 3' -58.9 NC_005263.2 + 6600 0.69 0.31459
Target:  5'- gUCGACGcGAuCGCgUUCgGCGGCGCgCUCg -3'
miRNA:   3'- -AGCUGUaCU-GCGgGAG-CGUCGCG-GAG- -5'
24145 3' -58.9 NC_005263.2 + 8155 0.69 0.292217
Target:  5'- gCGugAUGAUGCCCUgcgacugcguuUGCAGCaCCUg -3'
miRNA:   3'- aGCugUACUGCGGGA-----------GCGUCGcGGAg -5'
24145 3' -58.9 NC_005263.2 + 13205 0.69 0.330212
Target:  5'- gUCGACAUucGCGCCaggCGUgAGCGCCUg -3'
miRNA:   3'- -AGCUGUAc-UGCGGga-GCG-UCGCGGAg -5'
24145 3' -58.9 NC_005263.2 + 10289 0.7 0.271107
Target:  5'- gCGACAUGagcgccggaugcGCGCCCgUCGUcaacgAGCGCCa- -3'
miRNA:   3'- aGCUGUAC------------UGCGGG-AGCG-----UCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 6624 0.7 0.257727
Target:  5'- aCGACGgccGAcuCGCCCgcgucgaGCAGCGCCUg -3'
miRNA:   3'- aGCUGUa--CU--GCGGGag-----CGUCGCGGAg -5'
24145 3' -58.9 NC_005263.2 + 40064 0.7 0.257727
Target:  5'- cUCG-CGcGGCGCCacggCGCGGaCGCCUCg -3'
miRNA:   3'- -AGCuGUaCUGCGGga--GCGUC-GCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 1151 0.71 0.23199
Target:  5'- cUCGAaaguaGUG-CGCCCgUCGCGGCgacuuguGCCUCg -3'
miRNA:   3'- -AGCUg----UACuGCGGG-AGCGUCG-------CGGAG- -5'
24145 3' -58.9 NC_005263.2 + 28156 0.71 0.23139
Target:  5'- gCGAgguaaaaGUGAUGCCCgacgucgaauagCGCGGCGCCUUc -3'
miRNA:   3'- aGCUg------UACUGCGGGa-----------GCGUCGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 18927 0.72 0.19826
Target:  5'- aCGACAUcccguucugaaccGACGCCCgccacgUGCGGCGUUUCu -3'
miRNA:   3'- aGCUGUA-------------CUGCGGGa-----GCGUCGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 41269 0.72 0.188506
Target:  5'- cCGGuCGUGuCGCCgUCGCuGCGCUUCc -3'
miRNA:   3'- aGCU-GUACuGCGGgAGCGuCGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 19746 0.73 0.178696
Target:  5'- aUCGGCGcUGGCGCgCUgGCGGCGCUc- -3'
miRNA:   3'- -AGCUGU-ACUGCGgGAgCGUCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 17479 0.74 0.14347
Target:  5'- aCGuCAUGaACGCCCUgaucgcgCGCGGCGCgUCg -3'
miRNA:   3'- aGCuGUAC-UGCGGGA-------GCGUCGCGgAG- -5'
24145 3' -58.9 NC_005263.2 + 16423 0.74 0.139973
Target:  5'- cUCGGCGUcGGCGCUggCGCGGCggGCCUCg -3'
miRNA:   3'- -AGCUGUA-CUGCGGgaGCGUCG--CGGAG- -5'
24145 3' -58.9 NC_005263.2 + 42178 0.75 0.118595
Target:  5'- aCGACAUGACGCUCaCGCccgagggcaacAGCGuCCUCg -3'
miRNA:   3'- aGCUGUACUGCGGGaGCG-----------UCGC-GGAG- -5'
24145 3' -58.9 NC_005263.2 + 34066 0.75 0.118595
Target:  5'- cUCGACGcGGCGCCCguggccgaaccgUCGCcgucgcuGCGCCUCg -3'
miRNA:   3'- -AGCUGUaCUGCGGG------------AGCGu------CGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 34034 0.75 0.12536
Target:  5'- cCGACAUGG-GCCggCGCGGCGCgCUCa -3'
miRNA:   3'- aGCUGUACUgCGGgaGCGUCGCG-GAG- -5'
24145 3' -58.9 NC_005263.2 + 917 0.76 0.112171
Target:  5'- gUCGGCAUcGCGUCCUCGUAGCGUgcgccgCUCu -3'
miRNA:   3'- -AGCUGUAcUGCGGGAGCGUCGCG------GAG- -5'
24145 3' -58.9 NC_005263.2 + 5957 0.77 0.084672
Target:  5'- cCGGCAacUGGCGCaCCUCGCGacaCGCCUCg -3'
miRNA:   3'- aGCUGU--ACUGCG-GGAGCGUc--GCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 36400 1.1 0.0003
Target:  5'- cUCGACAUGACGCCCUCGCAGCGCCUCg -3'
miRNA:   3'- -AGCUGUACUGCGGGAGCGUCGCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.