Results 21 - 40 of 59 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24145 | 3' | -58.9 | NC_005263.2 | + | 10289 | 0.7 | 0.271107 |
Target: 5'- gCGACAUGagcgccggaugcGCGCCCgUCGUcaacgAGCGCCa- -3' miRNA: 3'- aGCUGUAC------------UGCGGG-AGCG-----UCGCGGag -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 11895 | 0.66 | 0.484784 |
Target: 5'- gCGGCGccgGGCGCCUgcgCGCuGGCGuCCUg -3' miRNA: 3'- aGCUGUa--CUGCGGGa--GCG-UCGC-GGAg -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 13205 | 0.69 | 0.330212 |
Target: 5'- gUCGACAUucGCGCCaggCGUgAGCGCCUg -3' miRNA: 3'- -AGCUGUAc-UGCGGga-GCG-UCGCGGAg -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 13721 | 0.66 | 0.474715 |
Target: 5'- gUCGcCGUccGACGUgCUCGCGGCGUUa- -3' miRNA: 3'- -AGCuGUA--CUGCGgGAGCGUCGCGGag -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 15834 | 0.67 | 0.389298 |
Target: 5'- cCGACcUGGCGCgCUUCGC-GUGgCUCg -3' miRNA: 3'- aGCUGuACUGCG-GGAGCGuCGCgGAG- -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 16423 | 0.74 | 0.139973 |
Target: 5'- cUCGGCGUcGGCGCUggCGCGGCggGCCUCg -3' miRNA: 3'- -AGCUGUA-CUGCGGgaGCGUCG--CGGAG- -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 17053 | 0.67 | 0.429818 |
Target: 5'- gCGGCGUGAacggcuucaugaaggUGCUCgagcagCGCAcgccGCGCCUCg -3' miRNA: 3'- aGCUGUACU---------------GCGGGa-----GCGU----CGCGGAG- -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 17190 | 0.67 | 0.407406 |
Target: 5'- gCGGCGU-ACGCCgUCGCcGCGCUcgacUCg -3' miRNA: 3'- aGCUGUAcUGCGGgAGCGuCGCGG----AG- -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 17479 | 0.74 | 0.14347 |
Target: 5'- aCGuCAUGaACGCCCUgaucgcgCGCGGCGCgUCg -3' miRNA: 3'- aGCuGUAC-UGCGGGA-------GCGUCGCGgAG- -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 17817 | 0.68 | 0.380444 |
Target: 5'- gCGGCcgagGAUgccgcgcgcgGCCCgauugCGCAGCGCUUCg -3' miRNA: 3'- aGCUGua--CUG----------CGGGa----GCGUCGCGGAG- -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 18927 | 0.72 | 0.19826 |
Target: 5'- aCGACAUcccguucugaaccGACGCCCgccacgUGCGGCGUUUCu -3' miRNA: 3'- aGCUGUA-------------CUGCGGGa-----GCGUCGCGGAG- -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 19746 | 0.73 | 0.178696 |
Target: 5'- aUCGGCGcUGGCGCgCUgGCGGCGCUc- -3' miRNA: 3'- -AGCUGU-ACUGCGgGAgCGUCGCGGag -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 22153 | 0.68 | 0.338235 |
Target: 5'- cUCGACGgcgcGACGCUCgcauugCGCcaAGCGCCg- -3' miRNA: 3'- -AGCUGUa---CUGCGGGa-----GCG--UCGCGGag -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 23541 | 0.67 | 0.407406 |
Target: 5'- uUCGGCGUGcCGaCCguggCGCAGcCGCCg- -3' miRNA: 3'- -AGCUGUACuGCgGGa---GCGUC-GCGGag -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 24283 | 0.67 | 0.426032 |
Target: 5'- aCGACc-GGCGCUUUCGCGGCGacgaUCa -3' miRNA: 3'- aGCUGuaCUGCGGGAGCGUCGCgg--AG- -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 25791 | 0.66 | 0.484784 |
Target: 5'- cUCGACGUcGACGCCCgcgaCGC--UGCCa- -3' miRNA: 3'- -AGCUGUA-CUGCGGGa---GCGucGCGGag -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 27648 | 0.68 | 0.371726 |
Target: 5'- aUCGACGUGACGaacgUCUCGgCGGCGgCa- -3' miRNA: 3'- -AGCUGUACUGCg---GGAGC-GUCGCgGag -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 28123 | 0.67 | 0.407406 |
Target: 5'- aCGGCAgUGGCGCCguCUUGCacgcugccAGCGCCg- -3' miRNA: 3'- aGCUGU-ACUGCGG--GAGCG--------UCGCGGag -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 28156 | 0.71 | 0.23139 |
Target: 5'- gCGAgguaaaaGUGAUGCCCgacgucgaauagCGCGGCGCCUUc -3' miRNA: 3'- aGCUg------UACUGCGGGa-----------GCGUCGCGGAG- -5' |
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24145 | 3' | -58.9 | NC_005263.2 | + | 28821 | 0.67 | 0.407406 |
Target: 5'- gUGAcCGUGACGCgCaCGCGGCGCUc- -3' miRNA: 3'- aGCU-GUACUGCGgGaGCGUCGCGGag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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