miRNA display CGI


Results 41 - 59 of 59 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24145 3' -58.9 NC_005263.2 + 30298 0.66 0.494956
Target:  5'- gCGGCAUccucGGC-CgCCUUGCcauGCGCCUCg -3'
miRNA:   3'- aGCUGUA----CUGcG-GGAGCGu--CGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 31614 0.66 0.46475
Target:  5'- cCGGuCGcGACGgCCgcgcggCGCAGCGCCg- -3'
miRNA:   3'- aGCU-GUaCUGCgGGa-----GCGUCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 31928 0.66 0.494956
Target:  5'- gUCGACGauuuUGCgUUCGCGGCGUCUg -3'
miRNA:   3'- -AGCUGUacu-GCGgGAGCGUCGCGGAg -5'
24145 3' -58.9 NC_005263.2 + 32194 0.66 0.445156
Target:  5'- aUCGAgGUaGAUGCCCU-GCGGCGagaUCa -3'
miRNA:   3'- -AGCUgUA-CUGCGGGAgCGUCGCgg-AG- -5'
24145 3' -58.9 NC_005263.2 + 32828 0.67 0.407406
Target:  5'- cUCGuACucGGCGCCCUU-CAGCGCCg- -3'
miRNA:   3'- -AGC-UGuaCUGCGGGAGcGUCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 34034 0.75 0.12536
Target:  5'- cCGACAUGG-GCCggCGCGGCGCgCUCa -3'
miRNA:   3'- aGCUGUACUgCGGgaGCGUCGCG-GAG- -5'
24145 3' -58.9 NC_005263.2 + 34066 0.75 0.118595
Target:  5'- cUCGACGcGGCGCCCguggccgaaccgUCGCcgucgcuGCGCCUCg -3'
miRNA:   3'- -AGCUGUaCUGCGGG------------AGCGu------CGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 34783 0.66 0.484784
Target:  5'- aUCaGCAUGACGCagCUCGCGaUGCCg- -3'
miRNA:   3'- -AGcUGUACUGCGg-GAGCGUcGCGGag -5'
24145 3' -58.9 NC_005263.2 + 35279 0.69 0.330212
Target:  5'- cCGA--UGGCGCCaagUGCGGCGCCa- -3'
miRNA:   3'- aGCUguACUGCGGga-GCGUCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 35359 0.67 0.407406
Target:  5'- gUCGGuCGUGAgCGCagaCgUCGCAGUGCCa- -3'
miRNA:   3'- -AGCU-GUACU-GCGg--G-AGCGUCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 36199 0.68 0.380444
Target:  5'- aUCGcACAgGACGCCagcgCGCAGgCGCC-Cg -3'
miRNA:   3'- -AGC-UGUaCUGCGGga--GCGUC-GCGGaG- -5'
24145 3' -58.9 NC_005263.2 + 36400 1.1 0.0003
Target:  5'- cUCGACAUGACGCCCUCGCAGCGCCUCg -3'
miRNA:   3'- -AGCUGUACUGCGGGAGCGUCGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 37827 0.68 0.338235
Target:  5'- cCGGCGcucaUGuCGCCgaCGCGGCGUUUCg -3'
miRNA:   3'- aGCUGU----ACuGCGGgaGCGUCGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 40064 0.7 0.257727
Target:  5'- cUCG-CGcGGCGCCacggCGCGGaCGCCUCg -3'
miRNA:   3'- -AGCuGUaCUGCGGga--GCGUC-GCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 41269 0.72 0.188506
Target:  5'- cCGGuCGUGuCGCCgUCGCuGCGCUUCc -3'
miRNA:   3'- aGCU-GUACuGCGGgAGCGuCGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 42178 0.75 0.118595
Target:  5'- aCGACAUGACGCUCaCGCccgagggcaacAGCGuCCUCg -3'
miRNA:   3'- aGCUGUACUGCGGGaGCG-----------UCGC-GGAG- -5'
24145 3' -58.9 NC_005263.2 + 42652 0.66 0.494956
Target:  5'- cCGACGUGGCaaCCgaUCGCuacuGCGCCg- -3'
miRNA:   3'- aGCUGUACUGcgGG--AGCGu---CGCGGag -5'
24145 3' -58.9 NC_005263.2 + 43207 0.67 0.416655
Target:  5'- gCGACGgcGCGCUaUCGCAGCGCg-- -3'
miRNA:   3'- aGCUGUacUGCGGgAGCGUCGCGgag -5'
24145 3' -58.9 NC_005263.2 + 44083 0.68 0.371726
Target:  5'- cUCGAgugGugGCCCgacUGguGCGCCUUc -3'
miRNA:   3'- -AGCUguaCugCGGGa--GCguCGCGGAG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.