miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24145 3' -58.9 NC_005263.2 + 32194 0.66 0.445156
Target:  5'- aUCGAgGUaGAUGCCCU-GCGGCGagaUCa -3'
miRNA:   3'- -AGCUgUA-CUGCGGGAgCGUCGCgg-AG- -5'
24145 3' -58.9 NC_005263.2 + 28821 0.67 0.407406
Target:  5'- gUGAcCGUGACGCgCaCGCGGCGCUc- -3'
miRNA:   3'- aGCU-GUACUGCGgGaGCGUCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 17190 0.67 0.407406
Target:  5'- gCGGCGU-ACGCCgUCGCcGCGCUcgacUCg -3'
miRNA:   3'- aGCUGUAcUGCGGgAGCGuCGCGG----AG- -5'
24145 3' -58.9 NC_005263.2 + 42652 0.66 0.494956
Target:  5'- cCGACGUGGCaaCCgaUCGCuacuGCGCCg- -3'
miRNA:   3'- aGCUGUACUGcgGG--AGCGu---CGCGGag -5'
24145 3' -58.9 NC_005263.2 + 9550 0.66 0.445156
Target:  5'- cCGACGcGGCGCucgcggcuugCCagGCGGCGCgCUCg -3'
miRNA:   3'- aGCUGUaCUGCG----------GGagCGUCGCG-GAG- -5'
24145 3' -58.9 NC_005263.2 + 32828 0.67 0.407406
Target:  5'- cUCGuACucGGCGCCCUU-CAGCGCCg- -3'
miRNA:   3'- -AGC-UGuaCUGCGGGAGcGUCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 31928 0.66 0.494956
Target:  5'- gUCGACGauuuUGCgUUCGCGGCGUCUg -3'
miRNA:   3'- -AGCUGUacu-GCGgGAGCGUCGCGGAg -5'
24145 3' -58.9 NC_005263.2 + 2966 0.67 0.407406
Target:  5'- gCGAgCGUGAUGCCCgucaGCGGaauGCCUa -3'
miRNA:   3'- aGCU-GUACUGCGGGag--CGUCg--CGGAg -5'
24145 3' -58.9 NC_005263.2 + 11895 0.66 0.484784
Target:  5'- gCGGCGccgGGCGCCUgcgCGCuGGCGuCCUg -3'
miRNA:   3'- aGCUGUa--CUGCGGGa--GCG-UCGC-GGAg -5'
24145 3' -58.9 NC_005263.2 + 9195 0.68 0.370861
Target:  5'- cUCGGCGcGGCGCCCggcuugcUCGUgacGGUGCCgUCg -3'
miRNA:   3'- -AGCUGUaCUGCGGG-------AGCG---UCGCGG-AG- -5'
24145 3' -58.9 NC_005263.2 + 3943 0.67 0.43267
Target:  5'- cCGGCAgguUGGCGCCgUUcugcagauagccgaGCAGCGUCUg -3'
miRNA:   3'- aGCUGU---ACUGCGGgAG--------------CGUCGCGGAg -5'
24145 3' -58.9 NC_005263.2 + 35359 0.67 0.407406
Target:  5'- gUCGGuCGUGAgCGCagaCgUCGCAGUGCCa- -3'
miRNA:   3'- -AGCU-GUACU-GCGg--G-AGCGUCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 23541 0.67 0.407406
Target:  5'- uUCGGCGUGcCGaCCguggCGCAGcCGCCg- -3'
miRNA:   3'- -AGCUGUACuGCgGGa---GCGUC-GCGGag -5'
24145 3' -58.9 NC_005263.2 + 34066 0.75 0.118595
Target:  5'- cUCGACGcGGCGCCCguggccgaaccgUCGCcgucgcuGCGCCUCg -3'
miRNA:   3'- -AGCUGUaCUGCGGG------------AGCGu------CGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 5957 0.77 0.084672
Target:  5'- cCGGCAacUGGCGCaCCUCGCGacaCGCCUCg -3'
miRNA:   3'- aGCUGU--ACUGCG-GGAGCGUc--GCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 28123 0.67 0.407406
Target:  5'- aCGGCAgUGGCGCCguCUUGCacgcugccAGCGCCg- -3'
miRNA:   3'- aGCUGU-ACUGCGG--GAGCG--------UCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 36400 1.1 0.0003
Target:  5'- cUCGACAUGACGCCCUCGCAGCGCCUCg -3'
miRNA:   3'- -AGCUGUACUGCGGGAGCGUCGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 37827 0.68 0.338235
Target:  5'- cCGGCGcucaUGuCGCCgaCGCGGCGUUUCg -3'
miRNA:   3'- aGCUGU----ACuGCGGgaGCGUCGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 3930 0.68 0.363144
Target:  5'- cCGGCA-GGCcuaGCgCCUCGCAcGCGCCa- -3'
miRNA:   3'- aGCUGUaCUG---CG-GGAGCGU-CGCGGag -5'
24145 3' -58.9 NC_005263.2 + 27648 0.68 0.371726
Target:  5'- aUCGACGUGACGaacgUCUCGgCGGCGgCa- -3'
miRNA:   3'- -AGCUGUACUGCg---GGAGC-GUCGCgGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.