miRNA display CGI


Results 21 - 40 of 59 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24145 3' -58.9 NC_005263.2 + 17190 0.67 0.407406
Target:  5'- gCGGCGU-ACGCCgUCGCcGCGCUcgacUCg -3'
miRNA:   3'- aGCUGUAcUGCGGgAGCGuCGCGG----AG- -5'
24145 3' -58.9 NC_005263.2 + 35359 0.67 0.407406
Target:  5'- gUCGGuCGUGAgCGCagaCgUCGCAGUGCCa- -3'
miRNA:   3'- -AGCU-GUACU-GCGg--G-AGCGUCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 28821 0.67 0.407406
Target:  5'- gUGAcCGUGACGCgCaCGCGGCGCUc- -3'
miRNA:   3'- aGCU-GUACUGCGgGaGCGUCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 28123 0.67 0.407406
Target:  5'- aCGGCAgUGGCGCCguCUUGCacgcugccAGCGCCg- -3'
miRNA:   3'- aGCUGU-ACUGCGG--GAGCG--------UCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 32828 0.67 0.407406
Target:  5'- cUCGuACucGGCGCCCUU-CAGCGCCg- -3'
miRNA:   3'- -AGC-UGuaCUGCGGGAGcGUCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 15834 0.67 0.389298
Target:  5'- cCGACcUGGCGCgCUUCGC-GUGgCUCg -3'
miRNA:   3'- aGCUGuACUGCG-GGAGCGuCGCgGAG- -5'
24145 3' -58.9 NC_005263.2 + 17817 0.68 0.380444
Target:  5'- gCGGCcgagGAUgccgcgcgcgGCCCgauugCGCAGCGCUUCg -3'
miRNA:   3'- aGCUGua--CUG----------CGGGa----GCGUCGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 36199 0.68 0.380444
Target:  5'- aUCGcACAgGACGCCagcgCGCAGgCGCC-Cg -3'
miRNA:   3'- -AGC-UGUaCUGCGGga--GCGUC-GCGGaG- -5'
24145 3' -58.9 NC_005263.2 + 27648 0.68 0.371726
Target:  5'- aUCGACGUGACGaacgUCUCGgCGGCGgCa- -3'
miRNA:   3'- -AGCUGUACUGCg---GGAGC-GUCGCgGag -5'
24145 3' -58.9 NC_005263.2 + 44083 0.68 0.371726
Target:  5'- cUCGAgugGugGCCCgacUGguGCGCCUUc -3'
miRNA:   3'- -AGCUguaCugCGGGa--GCguCGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 9195 0.68 0.370861
Target:  5'- cUCGGCGcGGCGCCCggcuugcUCGUgacGGUGCCgUCg -3'
miRNA:   3'- -AGCUGUaCUGCGGG-------AGCG---UCGCGG-AG- -5'
24145 3' -58.9 NC_005263.2 + 3930 0.68 0.363144
Target:  5'- cCGGCA-GGCcuaGCgCCUCGCAcGCGCCa- -3'
miRNA:   3'- aGCUGUaCUG---CG-GGAGCGU-CGCGGag -5'
24145 3' -58.9 NC_005263.2 + 22153 0.68 0.338235
Target:  5'- cUCGACGgcgcGACGCUCgcauugCGCcaAGCGCCg- -3'
miRNA:   3'- -AGCUGUa---CUGCGGGa-----GCG--UCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 37827 0.68 0.338235
Target:  5'- cCGGCGcucaUGuCGCCgaCGCGGCGUUUCg -3'
miRNA:   3'- aGCUGU----ACuGCGGgaGCGUCGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 2465 0.69 0.330212
Target:  5'- cUCGGCAa---GCaCCUCGaggAGCGCCUCa -3'
miRNA:   3'- -AGCUGUacugCG-GGAGCg--UCGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 13205 0.69 0.330212
Target:  5'- gUCGACAUucGCGCCaggCGUgAGCGCCUg -3'
miRNA:   3'- -AGCUGUAc-UGCGGga-GCG-UCGCGGAg -5'
24145 3' -58.9 NC_005263.2 + 35279 0.69 0.330212
Target:  5'- cCGA--UGGCGCCaagUGCGGCGCCa- -3'
miRNA:   3'- aGCUguACUGCGGga-GCGUCGCGGag -5'
24145 3' -58.9 NC_005263.2 + 652 0.69 0.329417
Target:  5'- gCGACGUGccggccagaucgaACGCCUcaUCGUAgcGCGCCUUg -3'
miRNA:   3'- aGCUGUAC-------------UGCGGG--AGCGU--CGCGGAG- -5'
24145 3' -58.9 NC_005263.2 + 6600 0.69 0.31459
Target:  5'- gUCGACGcGAuCGCgUUCgGCGGCGCgCUCg -3'
miRNA:   3'- -AGCUGUaCU-GCGgGAG-CGUCGCG-GAG- -5'
24145 3' -58.9 NC_005263.2 + 8573 0.69 0.306992
Target:  5'- aUCGGCGUGuCGUCCguuaCGCcgcGCGCUUCc -3'
miRNA:   3'- -AGCUGUACuGCGGGa---GCGu--CGCGGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.