miRNA display CGI


Results 1 - 20 of 151 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24146 3' -66.4 NC_005263.2 + 38490 0.66 0.232809
Target:  5'- cCGCG-AGGCGCUcacgcagauCGGCGUcgaCGUGUCGc -3'
miRNA:   3'- cGCGCgUCCGCGG---------GCCGCG---GCGCAGC- -5'
24146 3' -66.4 NC_005263.2 + 27243 0.66 0.232809
Target:  5'- -gGCGCA-GCGCCguugCGaCGCuCGCGUCGa -3'
miRNA:   3'- cgCGCGUcCGCGG----GCcGCG-GCGCAGC- -5'
24146 3' -66.4 NC_005263.2 + 24599 0.66 0.232809
Target:  5'- cGgGCGCAGGCGgU-GGCGgCGCagGUCa -3'
miRNA:   3'- -CgCGCGUCCGCgGgCCGCgGCG--CAGc -5'
24146 3' -66.4 NC_005263.2 + 18757 0.66 0.232809
Target:  5'- cGCGauCGUAGGCGgCgCGGUGCuCGCGcUGg -3'
miRNA:   3'- -CGC--GCGUCCGCgG-GCCGCG-GCGCaGC- -5'
24146 3' -66.4 NC_005263.2 + 1193 0.66 0.232809
Target:  5'- uGCGCgGCAGcGCGUucuuCCGGCGUCagauGCGcaUCGg -3'
miRNA:   3'- -CGCG-CGUC-CGCG----GGCCGCGG----CGC--AGC- -5'
24146 3' -66.4 NC_005263.2 + 20959 0.66 0.229425
Target:  5'- cGCGCGCuGucggacaucgccgacGCGgCUGcGCGCCugcGCGUCGa -3'
miRNA:   3'- -CGCGCGuC---------------CGCgGGC-CGCGG---CGCAGC- -5'
24146 3' -66.4 NC_005263.2 + 37706 0.66 0.229425
Target:  5'- cGCGCGCcggacccgcucgccGGCcgGCCCGGCG-CGUGgCGg -3'
miRNA:   3'- -CGCGCGu-------------CCG--CGGGCCGCgGCGCaGC- -5'
24146 3' -66.4 NC_005263.2 + 5197 0.66 0.227192
Target:  5'- cGCcUGCAGGCGC--GGCGUCGCuaccGUCGc -3'
miRNA:   3'- -CGcGCGUCCGCGggCCGCGGCG----CAGC- -5'
24146 3' -66.4 NC_005263.2 + 39225 0.66 0.227192
Target:  5'- cGCGCGCugcaccGGCaGCaCGG-GCCGCGUa- -3'
miRNA:   3'- -CGCGCGu-----CCG-CGgGCCgCGGCGCAgc -5'
24146 3' -66.4 NC_005263.2 + 31627 0.66 0.227192
Target:  5'- cCGCGC-GGCGCa--GCGCCGUcUCGg -3'
miRNA:   3'- cGCGCGuCCGCGggcCGCGGCGcAGC- -5'
24146 3' -66.4 NC_005263.2 + 21099 0.66 0.227192
Target:  5'- -gGUGUGGGCggcgacgaGCCCGGCGCaGCGg-- -3'
miRNA:   3'- cgCGCGUCCG--------CGGGCCGCGgCGCagc -5'
24146 3' -66.4 NC_005263.2 + 22836 0.66 0.227192
Target:  5'- cGCGCGCGGaucggcauGCaGCUgauCGGUGCUGCGUa- -3'
miRNA:   3'- -CGCGCGUC--------CG-CGG---GCCGCGGCGCAgc -5'
24146 3' -66.4 NC_005263.2 + 40132 0.66 0.227192
Target:  5'- uCGUGCA-GCuCUgGGCGCCGCGUg- -3'
miRNA:   3'- cGCGCGUcCGcGGgCCGCGGCGCAgc -5'
24146 3' -66.4 NC_005263.2 + 41161 0.66 0.227192
Target:  5'- uCGCGC-GGCG-UgGGCgGCCGuCGUCGa -3'
miRNA:   3'- cGCGCGuCCGCgGgCCG-CGGC-GCAGC- -5'
24146 3' -66.4 NC_005263.2 + 14598 0.66 0.221691
Target:  5'- cUGCGCGGuCGCCaugaaGGCGaguuucUCGCGUCGc -3'
miRNA:   3'- cGCGCGUCcGCGGg----CCGC------GGCGCAGC- -5'
24146 3' -66.4 NC_005263.2 + 47475 0.66 0.221691
Target:  5'- cGgGCGUcacuGGCaGCaCCGGC-CCGCuGUCGg -3'
miRNA:   3'- -CgCGCGu---CCG-CG-GGCCGcGGCG-CAGC- -5'
24146 3' -66.4 NC_005263.2 + 7981 0.66 0.221691
Target:  5'- gGCGC-CAGaGCugcacgagucgGCCCGaUGCCGUGUCGu -3'
miRNA:   3'- -CGCGcGUC-CG-----------CGGGCcGCGGCGCAGC- -5'
24146 3' -66.4 NC_005263.2 + 43225 0.66 0.220605
Target:  5'- aGCGCGCGcuacauggugagcGGCGgCagcggcaucggcaCGGCGCgCGCGUaCGg -3'
miRNA:   3'- -CGCGCGU-------------CCGCgG-------------GCCGCG-GCGCA-GC- -5'
24146 3' -66.4 NC_005263.2 + 30475 0.66 0.220063
Target:  5'- uUGCGCcacauccGGCGCCCuGGCGaCguuuugaucgucagCGCGUCGu -3'
miRNA:   3'- cGCGCGu------CCGCGGG-CCGC-G--------------GCGCAGC- -5'
24146 3' -66.4 NC_005263.2 + 44496 0.66 0.216304
Target:  5'- gGCcCGCAGGCGCCCgauugGGCgaauacaaucGCUGCGa-- -3'
miRNA:   3'- -CGcGCGUCCGCGGG-----CCG----------CGGCGCagc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.