Results 41 - 46 of 46 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 24146 | 5' | -53.2 | NC_005263.2 | + | 34427 | 0.74 | 0.336086 |
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Target: 5'- -aUGACGAGAUcGAA-CGCCUGCGCa- -3' miRNA: 3'- aaGCUGCUUUA-CUUcGCGGACGCGcu -5' |
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| 24146 | 5' | -53.2 | NC_005263.2 | + | 36202 | 0.74 | 0.327737 |
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Target: 5'- gUUGACGAA---GAGCGCCUGCaCGAg -3' miRNA: 3'- aAGCUGCUUuacUUCGCGGACGcGCU- -5' |
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| 24146 | 5' | -53.2 | NC_005263.2 | + | 10285 | 0.75 | 0.266497 |
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Target: 5'- gUCGGCGAcAUG-AGCGCCggaUGCGCGc -3' miRNA: 3'- aAGCUGCUuUACuUCGCGG---ACGCGCu -5' |
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| 24146 | 5' | -53.2 | NC_005263.2 | + | 13205 | 0.77 | 0.21485 |
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Target: 5'- gUCGACauucgcgccaGgcGUG-AGCGCCUGCGCGAg -3' miRNA: 3'- aAGCUG----------CuuUACuUCGCGGACGCGCU- -5' |
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| 24146 | 5' | -53.2 | NC_005263.2 | + | 37766 | 0.77 | 0.209035 |
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Target: 5'- gUCGGCaAGcUGccGCGCCUGCGCGAg -3' miRNA: 3'- aAGCUGcUUuACuuCGCGGACGCGCU- -5' |
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| 24146 | 5' | -53.2 | NC_005263.2 | + | 36249 | 1.07 | 0.001752 |
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Target: 5'- gUUCGACGAAAUGAAGCGCCUGCGCGAu -3' miRNA: 3'- -AAGCUGCUUUACUUCGCGGACGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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