Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24146 | 5' | -53.2 | NC_005263.2 | + | 27093 | 0.7 | 0.521916 |
Target: 5'- aUCGAUGAAGUcuGGCGCUucgacggGCGCGGc -3' miRNA: 3'- aAGCUGCUUUAcuUCGCGGa------CGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 28104 | 0.68 | 0.611539 |
Target: 5'- aUCGACGugucgaucgcAAGUGccGCGCCgGgGCGAa -3' miRNA: 3'- aAGCUGC----------UUUACuuCGCGGaCgCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 30657 | 0.67 | 0.691055 |
Target: 5'- gUCGaacGCGAucUGAAGUGCauccugcaUGCGCGGg -3' miRNA: 3'- aAGC---UGCUuuACUUCGCGg-------ACGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 32887 | 0.71 | 0.478969 |
Target: 5'- -gCGGCGAAAUuucguugacccgGAAGCGCUUGC-CGAc -3' miRNA: 3'- aaGCUGCUUUA------------CUUCGCGGACGcGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 33086 | 0.68 | 0.634326 |
Target: 5'- gUCGGCG-AAUGAucUGCUUGCGCGc -3' miRNA: 3'- aAGCUGCuUUACUucGCGGACGCGCu -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 33813 | 0.7 | 0.537304 |
Target: 5'- gUCGACGgcAUGAcgaucgcgcugcaucAGCuuuGCCUGCGCa- -3' miRNA: 3'- aAGCUGCuuUACU---------------UCG---CGGACGCGcu -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 34427 | 0.74 | 0.336086 |
Target: 5'- -aUGACGAGAUcGAA-CGCCUGCGCa- -3' miRNA: 3'- aaGCUGCUUUA-CUUcGCGGACGCGcu -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 35731 | 0.69 | 0.566274 |
Target: 5'- -aCGGCGAGAcgccggaaGAAGCGgCgcgGCGCGAg -3' miRNA: 3'- aaGCUGCUUUa-------CUUCGCgGa--CGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 36202 | 0.74 | 0.327737 |
Target: 5'- gUUGACGAA---GAGCGCCUGCaCGAg -3' miRNA: 3'- aAGCUGCUUuacUUCGCGGACGcGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 36249 | 1.07 | 0.001752 |
Target: 5'- gUUCGACGAAAUGAAGCGCCUGCGCGAu -3' miRNA: 3'- -AAGCUGCUUUACUUCGCGGACGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 36501 | 0.7 | 0.506702 |
Target: 5'- --aGGCGAAGUGcuGCGCCacuucaucgcgggGCGCGAc -3' miRNA: 3'- aagCUGCUUUACuuCGCGGa------------CGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 37359 | 0.68 | 0.645722 |
Target: 5'- -cCGACGGccgcauGCGCgUGCGCGAc -3' miRNA: 3'- aaGCUGCUuuacuuCGCGgACGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 37618 | 0.7 | 0.543947 |
Target: 5'- cUUCGACGGc---AAGCaCCUGCGCGGc -3' miRNA: 3'- -AAGCUGCUuuacUUCGcGGACGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 37766 | 0.77 | 0.209035 |
Target: 5'- gUCGGCaAGcUGccGCGCCUGCGCGAg -3' miRNA: 3'- aAGCUGcUUuACuuCGCGGACGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 38089 | 0.66 | 0.777985 |
Target: 5'- cUCGGCGGcGGUGcuGCGCCcgcaccugGCGCGc -3' miRNA: 3'- aAGCUGCU-UUACuuCGCGGa-------CGCGCu -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 38319 | 0.69 | 0.566274 |
Target: 5'- gUUCGAUGAGAUcGAuGCGC--GCGCGAc -3' miRNA: 3'- -AAGCUGCUUUA-CUuCGCGgaCGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 38614 | 0.72 | 0.418034 |
Target: 5'- -gCGcACGcGAUGGauAGCGCCgGCGCGAa -3' miRNA: 3'- aaGC-UGCuUUACU--UCGCGGaCGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 39685 | 0.68 | 0.634326 |
Target: 5'- -aCGugGAcgcGAUGggGCGa--GCGCGAg -3' miRNA: 3'- aaGCugCU---UUACuuCGCggaCGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 41337 | 0.68 | 0.622928 |
Target: 5'- cUUCGACGAGGccGAGCucGCCcggcGCGCGAu -3' miRNA: 3'- -AAGCUGCUUUacUUCG--CGGa---CGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 41526 | 0.66 | 0.765448 |
Target: 5'- gUCGACuacuu---GCGCCUGCGCa- -3' miRNA: 3'- aAGCUGcuuuacuuCGCGGACGCGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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