miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24146 5' -53.2 NC_005263.2 + 1053 0.66 0.756971
Target:  5'- cUUCGACGAAuc--AGCGCUUGUaauccuuaGCGAc -3'
miRNA:   3'- -AAGCUGCUUuacuUCGCGGACG--------CGCU- -5'
24146 5' -53.2 NC_005263.2 + 9783 0.69 0.577527
Target:  5'- aUCGcacCGAAcgGggGCGCCUcgccgcGUGCGGc -3'
miRNA:   3'- aAGCu--GCUUuaCuuCGCGGA------CGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 7274 0.68 0.642304
Target:  5'- aUCGACGggGcgagcgacaUGAcGCGUgccugcggccagguCUGCGCGAu -3'
miRNA:   3'- aAGCUGCuuU---------ACUuCGCG--------------GACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 42905 0.68 0.645722
Target:  5'- -gCGACGGuagGAcgccGCGCCUGCagGCGAu -3'
miRNA:   3'- aaGCUGCUuuaCUu---CGCGGACG--CGCU- -5'
24146 5' -53.2 NC_005263.2 + 42774 0.68 0.645722
Target:  5'- -aCGGCGgcGUGAcgauccAGCGCgaagGCGCGAa -3'
miRNA:   3'- aaGCUGCuuUACU------UCGCGga--CGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 1060 0.68 0.650277
Target:  5'- -gCGGCGcuugcgaggaggcuuGAcgGAAGUGCCgaauUGCGCGAc -3'
miRNA:   3'- aaGCUGC---------------UUuaCUUCGCGG----ACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 30657 0.67 0.691055
Target:  5'- gUCGaacGCGAucUGAAGUGCauccugcaUGCGCGGg -3'
miRNA:   3'- aAGC---UGCUuuACUUCGCGg-------ACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 42639 0.66 0.73541
Target:  5'- -aCGcCGAAGcGAAGUGgCUGCGCa- -3'
miRNA:   3'- aaGCuGCUUUaCUUCGCgGACGCGcu -5'
24146 5' -53.2 NC_005263.2 + 33086 0.68 0.634326
Target:  5'- gUCGGCG-AAUGAucUGCUUGCGCGc -3'
miRNA:   3'- aAGCUGCuUUACUucGCGGACGCGCu -5'
24146 5' -53.2 NC_005263.2 + 39685 0.68 0.634326
Target:  5'- -aCGugGAcgcGAUGggGCGa--GCGCGAg -3'
miRNA:   3'- aaGCugCU---UUACuuCGCggaCGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 961 0.7 0.532891
Target:  5'- -gCGACGuAGcgGcGGuCGCCUGCGCGu -3'
miRNA:   3'- aaGCUGC-UUuaCuUC-GCGGACGCGCu -5'
24146 5' -53.2 NC_005263.2 + 36501 0.7 0.506702
Target:  5'- --aGGCGAAGUGcuGCGCCacuucaucgcgggGCGCGAc -3'
miRNA:   3'- aagCUGCUUUACuuCGCGGa------------CGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 17364 0.71 0.478969
Target:  5'- gUCGACGAuccgaaccgcGUGAAGCugucuGCCgGCGCGGc -3'
miRNA:   3'- aAGCUGCUu---------UACUUCG-----CGGaCGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 16347 0.72 0.398792
Target:  5'- cUUCGACGAGAcGAAGCGCgCgGcCGCGu -3'
miRNA:   3'- -AAGCUGCUUUaCUUCGCG-GaC-GCGCu -5'
24146 5' -53.2 NC_005263.2 + 34427 0.74 0.336086
Target:  5'- -aUGACGAGAUcGAA-CGCCUGCGCa- -3'
miRNA:   3'- aaGCUGCUUUA-CUUcGCGGACGCGcu -5'
24146 5' -53.2 NC_005263.2 + 36249 1.07 0.001752
Target:  5'- gUUCGACGAAAUGAAGCGCCUGCGCGAu -3'
miRNA:   3'- -AAGCUGCUUUACUUCGCGGACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 35731 0.69 0.566274
Target:  5'- -aCGGCGAGAcgccggaaGAAGCGgCgcgGCGCGAg -3'
miRNA:   3'- aaGCUGCUUUa-------CUUCGCgGa--CGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 38614 0.72 0.418034
Target:  5'- -gCGcACGcGAUGGauAGCGCCgGCGCGAa -3'
miRNA:   3'- aaGC-UGCuUUACU--UCGCGGaCGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 15184 0.69 0.566274
Target:  5'- aUCGACGc---GAGcGCGCC-GCGCGAc -3'
miRNA:   3'- aAGCUGCuuuaCUU-CGCGGaCGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 18436 0.68 0.616093
Target:  5'- -gCGAUGAAccgcucgaggugcgcGUGAAGCaGCC-GCGCGGc -3'
miRNA:   3'- aaGCUGCUU---------------UACUUCG-CGGaCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.