Results 21 - 40 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24146 | 5' | -53.2 | NC_005263.2 | + | 37359 | 0.68 | 0.645722 |
Target: 5'- -cCGACGGccgcauGCGCgUGCGCGAc -3' miRNA: 3'- aaGCUGCUuuacuuCGCGgACGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 42905 | 0.68 | 0.645722 |
Target: 5'- -gCGACGGuagGAcgccGCGCCUGCagGCGAu -3' miRNA: 3'- aaGCUGCUuuaCUu---CGCGGACG--CGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 7274 | 0.68 | 0.642304 |
Target: 5'- aUCGACGggGcgagcgacaUGAcGCGUgccugcggccagguCUGCGCGAu -3' miRNA: 3'- aAGCUGCuuU---------ACUuCGCG--------------GACGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 33086 | 0.68 | 0.634326 |
Target: 5'- gUCGGCG-AAUGAucUGCUUGCGCGc -3' miRNA: 3'- aAGCUGCuUUACUucGCGGACGCGCu -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 42115 | 0.69 | 0.555078 |
Target: 5'- -aCGACGAGGau-AGCGUcgugCUGCGCGAc -3' miRNA: 3'- aaGCUGCUUUacuUCGCG----GACGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 38319 | 0.69 | 0.566274 |
Target: 5'- gUUCGAUGAGAUcGAuGCGC--GCGCGAc -3' miRNA: 3'- -AAGCUGCUUUA-CUuCGCGgaCGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 9783 | 0.69 | 0.577527 |
Target: 5'- aUCGcacCGAAcgGggGCGCCUcgccgcGUGCGGc -3' miRNA: 3'- aAGCu--GCUUuaCuuCGCGGA------CGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 20978 | 0.69 | 0.584303 |
Target: 5'- -cCGACGcggcugcGCGCCUGCGCGu -3' miRNA: 3'- aaGCUGCuuuacuuCGCGGACGCGCu -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 22104 | 0.69 | 0.588829 |
Target: 5'- aUUCGGCGA-----AGUGCC-GCGCGAg -3' miRNA: 3'- -AAGCUGCUuuacuUCGCGGaCGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 47362 | 0.69 | 0.599034 |
Target: 5'- gUCGcCGAAAUGGgcGGCGCgUucgaugcGCGCGAg -3' miRNA: 3'- aAGCuGCUUUACU--UCGCGgA-------CGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 22904 | 0.68 | 0.611539 |
Target: 5'- gUUCGugcCGGAcgGAGGUGCCcaagcUGCGCGc -3' miRNA: 3'- -AAGCu--GCUUuaCUUCGCGG-----ACGCGCu -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 27093 | 0.7 | 0.521916 |
Target: 5'- aUCGAUGAAGUcuGGCGCUucgacggGCGCGGc -3' miRNA: 3'- aAGCUGCUUUAcuUCGCGGa------CGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 21376 | 0.7 | 0.521916 |
Target: 5'- cUCGACGuGAUGguGCGCUUcGCGCu- -3' miRNA: 3'- aAGCUGCuUUACuuCGCGGA-CGCGcu -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 9452 | 0.71 | 0.48955 |
Target: 5'- cUUGGCGAGGUu-GGCGUCgaUGCGCGAc -3' miRNA: 3'- aAGCUGCUUUAcuUCGCGG--ACGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 32887 | 0.71 | 0.478969 |
Target: 5'- -gCGGCGAAAUuucguugacccgGAAGCGCUUGC-CGAc -3' miRNA: 3'- aaGCUGCUUUA------------CUUCGCGGACGcGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 11890 | 0.72 | 0.427864 |
Target: 5'- -aCGACGcggcgccGGGCGCCUGCGCGc -3' miRNA: 3'- aaGCUGCuuuac--UUCGCGGACGCGCu -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 36202 | 0.74 | 0.327737 |
Target: 5'- gUUGACGAA---GAGCGCCUGCaCGAg -3' miRNA: 3'- aAGCUGCUUuacUUCGCGGACGcGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 10285 | 0.75 | 0.266497 |
Target: 5'- gUCGGCGAcAUG-AGCGCCggaUGCGCGc -3' miRNA: 3'- aAGCUGCUuUACuUCGCGG---ACGCGCu -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 13205 | 0.77 | 0.21485 |
Target: 5'- gUCGACauucgcgccaGgcGUG-AGCGCCUGCGCGAg -3' miRNA: 3'- aAGCUG----------CuuUACuUCGCGGACGCGCU- -5' |
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24146 | 5' | -53.2 | NC_005263.2 | + | 15469 | 0.66 | 0.767552 |
Target: 5'- -gCGACGAuuUGccGUGCUgcggcgGCGCGGu -3' miRNA: 3'- aaGCUGCUuuACuuCGCGGa-----CGCGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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