miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24146 5' -53.2 NC_005263.2 + 36249 1.07 0.001752
Target:  5'- gUUCGACGAAAUGAAGCGCCUGCGCGAu -3'
miRNA:   3'- -AAGCUGCUUUACUUCGCGGACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 37766 0.77 0.209035
Target:  5'- gUCGGCaAGcUGccGCGCCUGCGCGAg -3'
miRNA:   3'- aAGCUGcUUuACuuCGCGGACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 13205 0.77 0.21485
Target:  5'- gUCGACauucgcgccaGgcGUG-AGCGCCUGCGCGAg -3'
miRNA:   3'- aAGCUG----------CuuUACuUCGCGGACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 10285 0.75 0.266497
Target:  5'- gUCGGCGAcAUG-AGCGCCggaUGCGCGc -3'
miRNA:   3'- aAGCUGCUuUACuUCGCGG---ACGCGCu -5'
24146 5' -53.2 NC_005263.2 + 36202 0.74 0.327737
Target:  5'- gUUGACGAA---GAGCGCCUGCaCGAg -3'
miRNA:   3'- aAGCUGCUUuacUUCGCGGACGcGCU- -5'
24146 5' -53.2 NC_005263.2 + 34427 0.74 0.336086
Target:  5'- -aUGACGAGAUcGAA-CGCCUGCGCa- -3'
miRNA:   3'- aaGCUGCUUUA-CUUcGCGGACGCGcu -5'
24146 5' -53.2 NC_005263.2 + 16347 0.72 0.398792
Target:  5'- cUUCGACGAGAcGAAGCGCgCgGcCGCGu -3'
miRNA:   3'- -AAGCUGCUUUaCUUCGCG-GaC-GCGCu -5'
24146 5' -53.2 NC_005263.2 + 38614 0.72 0.418034
Target:  5'- -gCGcACGcGAUGGauAGCGCCgGCGCGAa -3'
miRNA:   3'- aaGC-UGCuUUACU--UCGCGGaCGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 11890 0.72 0.427864
Target:  5'- -aCGACGcggcgccGGGCGCCUGCGCGc -3'
miRNA:   3'- aaGCUGCuuuac--UUCGCGGACGCGCu -5'
24146 5' -53.2 NC_005263.2 + 32887 0.71 0.478969
Target:  5'- -gCGGCGAAAUuucguugacccgGAAGCGCUUGC-CGAc -3'
miRNA:   3'- aaGCUGCUUUA------------CUUCGCGGACGcGCU- -5'
24146 5' -53.2 NC_005263.2 + 17364 0.71 0.478969
Target:  5'- gUCGACGAuccgaaccgcGUGAAGCugucuGCCgGCGCGGc -3'
miRNA:   3'- aAGCUGCUu---------UACUUCG-----CGGaCGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 9452 0.71 0.48955
Target:  5'- cUUGGCGAGGUu-GGCGUCgaUGCGCGAc -3'
miRNA:   3'- aAGCUGCUUUAcuUCGCGG--ACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 36501 0.7 0.506702
Target:  5'- --aGGCGAAGUGcuGCGCCacuucaucgcgggGCGCGAc -3'
miRNA:   3'- aagCUGCUUUACuuCGCGGa------------CGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 21376 0.7 0.521916
Target:  5'- cUCGACGuGAUGguGCGCUUcGCGCu- -3'
miRNA:   3'- aAGCUGCuUUACuuCGCGGA-CGCGcu -5'
24146 5' -53.2 NC_005263.2 + 27093 0.7 0.521916
Target:  5'- aUCGAUGAAGUcuGGCGCUucgacggGCGCGGc -3'
miRNA:   3'- aAGCUGCUUUAcuUCGCGGa------CGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 961 0.7 0.532891
Target:  5'- -gCGACGuAGcgGcGGuCGCCUGCGCGu -3'
miRNA:   3'- aaGCUGC-UUuaCuUC-GCGGACGCGCu -5'
24146 5' -53.2 NC_005263.2 + 33813 0.7 0.537304
Target:  5'- gUCGACGgcAUGAcgaucgcgcugcaucAGCuuuGCCUGCGCa- -3'
miRNA:   3'- aAGCUGCuuUACU---------------UCG---CGGACGCGcu -5'
24146 5' -53.2 NC_005263.2 + 37618 0.7 0.543947
Target:  5'- cUUCGACGGc---AAGCaCCUGCGCGGc -3'
miRNA:   3'- -AAGCUGCUuuacUUCGcGGACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 42115 0.69 0.555078
Target:  5'- -aCGACGAGGau-AGCGUcgugCUGCGCGAc -3'
miRNA:   3'- aaGCUGCUUUacuUCGCG----GACGCGCU- -5'
24146 5' -53.2 NC_005263.2 + 35731 0.69 0.566274
Target:  5'- -aCGGCGAGAcgccggaaGAAGCGgCgcgGCGCGAg -3'
miRNA:   3'- aaGCUGCUUUa-------CUUCGCgGa--CGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.