miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24147 3' -53.9 NC_005263.2 + 23893 0.66 0.765485
Target:  5'- -gCGUGagcGCGCUCG--UGAGCGCGc -3'
miRNA:   3'- caGCAUgaaCGCGAGCuaGCUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 29148 0.77 0.199756
Target:  5'- cGUCGUGCcggcUGCGCUCGuaaccggcgcgcUCGAGCGCu -3'
miRNA:   3'- -CAGCAUGa---ACGCGAGCu-----------AGCUCGCGu -5'
24147 3' -53.9 NC_005263.2 + 30368 0.67 0.688698
Target:  5'- cGUCGUGCa-GCGCUucggggaugugcgCGAUCGcuucggauAGCGCGa -3'
miRNA:   3'- -CAGCAUGaaCGCGA-------------GCUAGC--------UCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 31264 0.66 0.743329
Target:  5'- -aCGU-CUcGCGCaUCGAcugguugaacgcgUCGAGCGCGu -3'
miRNA:   3'- caGCAuGAaCGCG-AGCU-------------AGCUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 32094 0.74 0.283778
Target:  5'- -aCGUGCggcgGCGUcggugCGAUCGAGCGCu -3'
miRNA:   3'- caGCAUGaa--CGCGa----GCUAGCUCGCGu -5'
24147 3' -53.9 NC_005263.2 + 32686 0.67 0.699786
Target:  5'- uGUCG-ACgUGCGUcagcaggUCGGUCacGAGCGCAu -3'
miRNA:   3'- -CAGCaUGaACGCG-------AGCUAG--CUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 35963 0.73 0.355711
Target:  5'- -gCGUGCaagGCGCUCGAccgccUgGAGCGCGc -3'
miRNA:   3'- caGCAUGaa-CGCGAGCU-----AgCUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 36122 1.09 0.001091
Target:  5'- cGUCGUACUUGCGCUCGAUCGAGCGCAa -3'
miRNA:   3'- -CAGCAUGAACGCGAGCUAGCUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 37365 0.68 0.632637
Target:  5'- -cCGUGCUcgaUGCGCUCGAgucugcgUCGcccuggcuGCGCGa -3'
miRNA:   3'- caGCAUGA---ACGCGAGCU-------AGCu-------CGCGU- -5'
24147 3' -53.9 NC_005263.2 + 38444 0.7 0.480256
Target:  5'- -aCGUGCUcggcggcgacauUGCGCUCGA-C-AGCGCAa -3'
miRNA:   3'- caGCAUGA------------ACGCGAGCUaGcUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 40197 0.73 0.338673
Target:  5'- ---aUGCgUGCGCauUCGAUCGAGCGCu -3'
miRNA:   3'- cagcAUGaACGCG--AGCUAGCUCGCGu -5'
24147 3' -53.9 NC_005263.2 + 41662 0.69 0.577661
Target:  5'- cUCGUGCUcugGCGgcagaUCG-UCGGGCGCGg -3'
miRNA:   3'- cAGCAUGAa--CGCg----AGCuAGCUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 42894 0.67 0.68981
Target:  5'- -gCGUGCcgcGCGCUCGccuggacgCGAGUGCGc -3'
miRNA:   3'- caGCAUGaa-CGCGAGCua------GCUCGCGU- -5'
24147 3' -53.9 NC_005263.2 + 46601 0.66 0.722833
Target:  5'- aUCG-ACgccgUGCGCUCGAaagaaacCGAGUGCc -3'
miRNA:   3'- cAGCaUGa---ACGCGAGCUa------GCUCGCGu -5'
24147 3' -53.9 NC_005263.2 + 47802 0.66 0.755006
Target:  5'- -cCGUAUUagGCGCUUGGggcuucauuaUCGGGUGCGc -3'
miRNA:   3'- caGCAUGAa-CGCGAGCU----------AGCUCGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.