Results 1 - 20 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24147 | 3' | -53.9 | NC_005263.2 | + | 41662 | 0.69 | 0.577661 |
Target: 5'- cUCGUGCUcugGCGgcagaUCG-UCGGGCGCGg -3' miRNA: 3'- cAGCAUGAa--CGCg----AGCuAGCUCGCGU- -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 11390 | 0.66 | 0.755006 |
Target: 5'- cUCGcgGCcUGCGCgcaCGugguUCGGGCGCGg -3' miRNA: 3'- cAGCa-UGaACGCGa--GCu---AGCUCGCGU- -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 11975 | 1.03 | 0.00318 |
Target: 5'- -cCGUACUUGCGCUCGAUCGAGCGCAa -3' miRNA: 3'- caGCAUGAACGCGAGCUAGCUCGCGU- -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 29148 | 0.77 | 0.199756 |
Target: 5'- cGUCGUGCcggcUGCGCUCGuaaccggcgcgcUCGAGCGCu -3' miRNA: 3'- -CAGCAUGa---ACGCGAGCu-----------AGCUCGCGu -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 7898 | 0.74 | 0.29871 |
Target: 5'- --aGUACgacgaauaGCGCUCGAUCGAauGCGCAc -3' miRNA: 3'- cagCAUGaa------CGCGAGCUAGCU--CGCGU- -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 9645 | 0.74 | 0.306401 |
Target: 5'- aUCugGCUUGCGCU--GUCGAGCGCAa -3' miRNA: 3'- cAGcaUGAACGCGAgcUAGCUCGCGU- -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 10001 | 0.7 | 0.490721 |
Target: 5'- -cCGU-CUUGCGCgccaGGUgCGGGCGCAg -3' miRNA: 3'- caGCAuGAACGCGag--CUA-GCUCGCGU- -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 681 | 0.7 | 0.511956 |
Target: 5'- --aGUGCccGUGCUCGGU-GAGCGCGa -3' miRNA: 3'- cagCAUGaaCGCGAGCUAgCUCGCGU- -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 34 | 0.7 | 0.522716 |
Target: 5'- -gCGUcACUgGCGCggcaGGUCGGGCGCGc -3' miRNA: 3'- caGCA-UGAaCGCGag--CUAGCUCGCGU- -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 31264 | 0.66 | 0.743329 |
Target: 5'- -aCGU-CUcGCGCaUCGAcugguugaacgcgUCGAGCGCGu -3' miRNA: 3'- caGCAuGAaCGCG-AGCU-------------AGCUCGCGU- -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 2240 | 0.67 | 0.705305 |
Target: 5'- -gCGUAC--GCGC-CGAuguacguguaguuguUCGAGCGCAg -3' miRNA: 3'- caGCAUGaaCGCGaGCU---------------AGCUCGCGU- -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 32686 | 0.67 | 0.699786 |
Target: 5'- uGUCG-ACgUGCGUcagcaggUCGGUCacGAGCGCAu -3' miRNA: 3'- -CAGCaUGaACGCG-------AGCUAG--CUCGCGU- -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 17889 | 0.68 | 0.600026 |
Target: 5'- aGUUGUGCUUaccgugaacgGCGCgcaGAUCG-GCGCGc -3' miRNA: 3'- -CAGCAUGAA----------CGCGag-CUAGCuCGCGU- -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 46601 | 0.66 | 0.722833 |
Target: 5'- aUCG-ACgccgUGCGCUCGAaagaaacCGAGUGCc -3' miRNA: 3'- cAGCaUGa---ACGCGAGCUa------GCUCGCGu -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 9723 | 0.68 | 0.62926 |
Target: 5'- -gCGcGCUUGCGCUCGuucgccacagcaguGUCGAucgcgguGCGCAc -3' miRNA: 3'- caGCaUGAACGCGAGC--------------UAGCU-------CGCGU- -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 42894 | 0.67 | 0.68981 |
Target: 5'- -gCGUGCcgcGCGCUCGccuggacgCGAGUGCGc -3' miRNA: 3'- caGCAUGaa-CGCGAGCua------GCUCGCGU- -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 18279 | 0.66 | 0.722833 |
Target: 5'- -cCGgGCgaUGCGCUCG-UCGuGCGCGc -3' miRNA: 3'- caGCaUGa-ACGCGAGCuAGCuCGCGU- -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 23893 | 0.66 | 0.765485 |
Target: 5'- -gCGUGagcGCGCUCG--UGAGCGCGc -3' miRNA: 3'- caGCAUgaaCGCGAGCuaGCUCGCGU- -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 37365 | 0.68 | 0.632637 |
Target: 5'- -cCGUGCUcgaUGCGCUCGAgucugcgUCGcccuggcuGCGCGa -3' miRNA: 3'- caGCAUGA---ACGCGAGCU-------AGCu-------CGCGU- -5' |
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24147 | 3' | -53.9 | NC_005263.2 | + | 4265 | 0.67 | 0.656264 |
Target: 5'- -aCGUugUUGCGCcCGGUCGAcacgaacaucGUGCc -3' miRNA: 3'- caGCAugAACGCGaGCUAGCU----------CGCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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