miRNA display CGI


Results 21 - 40 of 80 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24147 5' -55.7 NC_005263.2 + 10673 0.67 0.59892
Target:  5'- cCGCGCGCgccgacguaugacgaCGAGGaCGGccgcGCGacgCGAUGCa -3'
miRNA:   3'- -GCGCGCGa--------------GCUCC-GCU----UGCa--GCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 43226 0.67 0.597825
Target:  5'- gCGCGCGCUacauGGUGAGCGgCGGc-- -3'
miRNA:   3'- -GCGCGCGAgcu-CCGCUUGCaGCUaug -5'
24147 5' -55.7 NC_005263.2 + 1276 0.67 0.597825
Target:  5'- gGCGCGC-CGccuGGCGcGCGUUGcguUACg -3'
miRNA:   3'- gCGCGCGaGCu--CCGCuUGCAGCu--AUG- -5'
24147 5' -55.7 NC_005263.2 + 17404 0.67 0.58689
Target:  5'- cCGCGCGCcu--GGCGGGCGgugucgcaGGUGCa -3'
miRNA:   3'- -GCGCGCGagcuCCGCUUGCag------CUAUG- -5'
24147 5' -55.7 NC_005263.2 + 32607 0.67 0.58689
Target:  5'- uCGCcgaGCGuCUUGAGcucGCGGAUGUCGGUAg -3'
miRNA:   3'- -GCG---CGC-GAGCUC---CGCUUGCAGCUAUg -5'
24147 5' -55.7 NC_005263.2 + 6575 0.67 0.58689
Target:  5'- cCGCGCGUUUGcgcAGGCGcaaguaGUCGAcGCg -3'
miRNA:   3'- -GCGCGCGAGC---UCCGCuug---CAGCUaUG- -5'
24147 5' -55.7 NC_005263.2 + 35836 0.67 0.58689
Target:  5'- -aCGCGUUCGucGCGGACGUCa---- -3'
miRNA:   3'- gcGCGCGAGCucCGCUUGCAGcuaug -5'
24147 5' -55.7 NC_005263.2 + 39109 0.68 0.575993
Target:  5'- aCGCGCGaCUCGuGcGCcguGCGUCGGcGCu -3'
miRNA:   3'- -GCGCGC-GAGCuC-CGcu-UGCAGCUaUG- -5'
24147 5' -55.7 NC_005263.2 + 21716 0.68 0.572733
Target:  5'- gCGUGCggcuggaauccaagGCUCGGGuCGAGCGUCGcgAUa -3'
miRNA:   3'- -GCGCG--------------CGAGCUCcGCUUGCAGCuaUG- -5'
24147 5' -55.7 NC_005263.2 + 12579 0.68 0.565142
Target:  5'- cCGCGCGC-CGccGGGCGca-GUCGGcGCg -3'
miRNA:   3'- -GCGCGCGaGC--UCCGCuugCAGCUaUG- -5'
24147 5' -55.7 NC_005263.2 + 27894 0.68 0.558657
Target:  5'- gGCGCGCagucgggcaaagcacUCGAcGGCGGcGCGUCGcccgGCg -3'
miRNA:   3'- gCGCGCG---------------AGCU-CCGCU-UGCAGCua--UG- -5'
24147 5' -55.7 NC_005263.2 + 8267 0.68 0.554346
Target:  5'- uGCGCGUUCGgacggccacAGcGCGAgcgGCGUCGGUc- -3'
miRNA:   3'- gCGCGCGAGC---------UC-CGCU---UGCAGCUAug -5'
24147 5' -55.7 NC_005263.2 + 41475 0.68 0.554346
Target:  5'- gGCGCuGCUCGAcGCGGGCGagUCGGc-- -3'
miRNA:   3'- gCGCG-CGAGCUcCGCUUGC--AGCUaug -5'
24147 5' -55.7 NC_005263.2 + 17180 0.68 0.554346
Target:  5'- uGCGCaGCUCGcGGCGuacgcCGUCGccGCg -3'
miRNA:   3'- gCGCG-CGAGCuCCGCuu---GCAGCuaUG- -5'
24147 5' -55.7 NC_005263.2 + 41503 0.68 0.554346
Target:  5'- aGCGCGCcgcCGAacGCGAucGCGUCGAcUACu -3'
miRNA:   3'- gCGCGCGa--GCUc-CGCU--UGCAGCU-AUG- -5'
24147 5' -55.7 NC_005263.2 + 28725 0.68 0.552193
Target:  5'- uGCGCGCcgcCGAGGCuGACGgcaaugcgcaucCGGUGCu -3'
miRNA:   3'- gCGCGCGa--GCUCCGcUUGCa-----------GCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 38315 0.68 0.54361
Target:  5'- cCGCaCGCggCGAGGCGccccCGuUCGGUGCg -3'
miRNA:   3'- -GCGcGCGa-GCUCCGCuu--GC-AGCUAUG- -5'
24147 5' -55.7 NC_005263.2 + 23910 0.68 0.54361
Target:  5'- aGCGCGCccgCGAGcGUGAcCGUCGcuuugGCg -3'
miRNA:   3'- gCGCGCGa--GCUC-CGCUuGCAGCua---UG- -5'
24147 5' -55.7 NC_005263.2 + 31089 0.68 0.532944
Target:  5'- aCGCGCuGCUCGAGcgauaCGAACGcuUCGAcACc -3'
miRNA:   3'- -GCGCG-CGAGCUCc----GCUUGC--AGCUaUG- -5'
24147 5' -55.7 NC_005263.2 + 10938 0.68 0.532944
Target:  5'- uCGCGuCGUgCGGGGUGAGCGcuUCGAg-- -3'
miRNA:   3'- -GCGC-GCGaGCUCCGCUUGC--AGCUaug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.