miRNA display CGI


Results 1 - 20 of 73 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24148 5' -53.5 NC_005263.2 + 30732 0.65 0.831071
Target:  5'- gCCGGCAGAcagcuucacgcgguuCGGAucgucgaccGCGAUGccgaacgucgaagccACCGGCg -3'
miRNA:   3'- -GGCUGUCU---------------GCCUu--------CGCUACa--------------UGGCCG- -5'
24148 5' -53.5 NC_005263.2 + 33502 0.66 0.826532
Target:  5'- cCUuGCAGAUGGAAGuCGGUGgauuugaGCauaGGCa -3'
miRNA:   3'- -GGcUGUCUGCCUUC-GCUACa------UGg--CCG- -5'
24148 5' -53.5 NC_005263.2 + 33465 0.66 0.826532
Target:  5'- aCGGCGGACGagcGCGuAUGgcugaucgACUGGCg -3'
miRNA:   3'- gGCUGUCUGCcuuCGC-UACa-------UGGCCG- -5'
24148 5' -53.5 NC_005263.2 + 24585 0.66 0.826532
Target:  5'- gCCGAauaucauguCGGGCGcAGGCGGUGg--CGGCg -3'
miRNA:   3'- -GGCU---------GUCUGCcUUCGCUACaugGCCG- -5'
24148 5' -53.5 NC_005263.2 + 35538 0.66 0.822864
Target:  5'- cCCGGCGGcgcGCGGGcgGGCGcuacggcgccGCCGGCc -3'
miRNA:   3'- -GGCUGUC---UGCCU--UCGCuaca------UGGCCG- -5'
24148 5' -53.5 NC_005263.2 + 21157 0.66 0.807875
Target:  5'- aCGACcGACGGcAGCGAcgucaucaacGUGCgUGGCg -3'
miRNA:   3'- gGCUGuCUGCCuUCGCUa---------CAUG-GCCG- -5'
24148 5' -53.5 NC_005263.2 + 3188 0.66 0.807875
Target:  5'- gCGugAGcAC-GAGGcCGGUGaGCCGGCc -3'
miRNA:   3'- gGCugUC-UGcCUUC-GCUACaUGGCCG- -5'
24148 5' -53.5 NC_005263.2 + 14972 0.66 0.807875
Target:  5'- aUGGCuGGCGGcAGCGAUcugcgcGUgacguucugcucGCCGGCu -3'
miRNA:   3'- gGCUGuCUGCCuUCGCUA------CA------------UGGCCG- -5'
24148 5' -53.5 NC_005263.2 + 10398 0.66 0.807875
Target:  5'- gCCGGCcGGCG--AGCGG-GU-CCGGCg -3'
miRNA:   3'- -GGCUGuCUGCcuUCGCUaCAuGGCCG- -5'
24148 5' -53.5 NC_005263.2 + 38770 0.66 0.806922
Target:  5'- aCCGAUAcgauccgcaugacGAUGGAAGCGGccacgAgCGGCa -3'
miRNA:   3'- -GGCUGU-------------CUGCCUUCGCUaca--UgGCCG- -5'
24148 5' -53.5 NC_005263.2 + 9298 0.66 0.805968
Target:  5'- aCGACAGcuuguagaucauCGGGuucgagcuGGCGAaGUcGCCGGCa -3'
miRNA:   3'- gGCUGUCu-----------GCCU--------UCGCUaCA-UGGCCG- -5'
24148 5' -53.5 NC_005263.2 + 17173 0.66 0.792411
Target:  5'- gCUGGCAGACGauugcgaaggcgcucGAguGGgGAUGggacaagcugGCCGGCa -3'
miRNA:   3'- -GGCUGUCUGC---------------CU--UCgCUACa---------UGGCCG- -5'
24148 5' -53.5 NC_005263.2 + 47214 0.66 0.792411
Target:  5'- gCCGGCGG-CGaccgccgcgcugaacGAAGCGccg-GCCGGCa -3'
miRNA:   3'- -GGCUGUCuGC---------------CUUCGCuacaUGGCCG- -5'
24148 5' -53.5 NC_005263.2 + 18705 0.66 0.788476
Target:  5'- gCGGCAGGCGcGGGCGGcaacccuuuccUGUAagcgcgUCGGCg -3'
miRNA:   3'- gGCUGUCUGCcUUCGCU-----------ACAU------GGCCG- -5'
24148 5' -53.5 NC_005263.2 + 22498 0.67 0.778524
Target:  5'- nCGGCGGcCGGcGGCGGUucGgCGGCu -3'
miRNA:   3'- gGCUGUCuGCCuUCGCUAcaUgGCCG- -5'
24148 5' -53.5 NC_005263.2 + 15580 0.67 0.778524
Target:  5'- gCCGACAGuCGcc-GCGuucgacGUGCUGGCg -3'
miRNA:   3'- -GGCUGUCuGCcuuCGCua----CAUGGCCG- -5'
24148 5' -53.5 NC_005263.2 + 28952 0.67 0.77752
Target:  5'- gCCGGCGGAUGcacggucacgacGAcgcgcaagcgcccGGCGAUGcGCuCGGCg -3'
miRNA:   3'- -GGCUGUCUGC------------CU-------------UCGCUACaUG-GCCG- -5'
24148 5' -53.5 NC_005263.2 + 6078 0.67 0.76842
Target:  5'- gCCGACAGGaaGccuuGGCGcgGccggccgcacUGCCGGCa -3'
miRNA:   3'- -GGCUGUCUgcCu---UCGCuaC----------AUGGCCG- -5'
24148 5' -53.5 NC_005263.2 + 31994 0.67 0.76842
Target:  5'- cCCgGACuguGGCGGGAGUGGcacUGUgGgCGGCg -3'
miRNA:   3'- -GG-CUGu--CUGCCUUCGCU---ACA-UgGCCG- -5'
24148 5' -53.5 NC_005263.2 + 851 0.67 0.76842
Target:  5'- aCCGAgc-GCGGAcAGCGuacccgucGUGCCGGCc -3'
miRNA:   3'- -GGCUgucUGCCU-UCGCua------CAUGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.