miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24149 3' -57.4 NC_005263.2 + 35771 1.06 0.000792
Target:  5'- uGAGGAAACCGGCCACGCCGGCGAUUAc -3'
miRNA:   3'- -CUCCUUUGGCCGGUGCGGCCGCUAAU- -5'
24149 3' -57.4 NC_005263.2 + 45747 0.74 0.186367
Target:  5'- uGAGGGuuGGCaCGGCCuGCGCUGGCGGa-- -3'
miRNA:   3'- -CUCCU--UUG-GCCGG-UGCGGCCGCUaau -5'
24149 3' -57.4 NC_005263.2 + 25621 0.74 0.186367
Target:  5'- -----cGCCGGCCGcCGCCGGCGAc-- -3'
miRNA:   3'- cuccuuUGGCCGGU-GCGGCCGCUaau -5'
24149 3' -57.4 NC_005263.2 + 6202 0.73 0.202052
Target:  5'- cAGGAAGCCGGUCGCGuuGGUc---- -3'
miRNA:   3'- cUCCUUUGGCCGGUGCggCCGcuaau -5'
24149 3' -57.4 NC_005263.2 + 19307 0.73 0.213135
Target:  5'- -uGGAAACgCGGCC-CGCCGGCu---- -3'
miRNA:   3'- cuCCUUUG-GCCGGuGCGGCCGcuaau -5'
24149 3' -57.4 NC_005263.2 + 30717 0.71 0.256095
Target:  5'- cAGGc-GCgCGGCCGCGCCGGCa---- -3'
miRNA:   3'- cUCCuuUG-GCCGGUGCGGCCGcuaau -5'
24149 3' -57.4 NC_005263.2 + 14555 0.71 0.26892
Target:  5'- aAGGAAgcgcuuaGCCGGCCGCguGCCGGCu---- -3'
miRNA:   3'- cUCCUU-------UGGCCGGUG--CGGCCGcuaau -5'
24149 3' -57.4 NC_005263.2 + 17806 0.71 0.269609
Target:  5'- --aGAcGCCGGCCGCGCcCGGCGc--- -3'
miRNA:   3'- cucCUuUGGCCGGUGCG-GCCGCuaau -5'
24149 3' -57.4 NC_005263.2 + 6083 0.71 0.290949
Target:  5'- cAGGAAgccuuggcgcgGCCGGCCGCacuGCCGGCa---- -3'
miRNA:   3'- cUCCUU-----------UGGCCGGUG---CGGCCGcuaau -5'
24149 3' -57.4 NC_005263.2 + 39114 0.7 0.321427
Target:  5'- uGGGAcgugguGGCCGGCCagaucaACGUCGGCGGc-- -3'
miRNA:   3'- cUCCU------UUGGCCGG------UGCGGCCGCUaau -5'
24149 3' -57.4 NC_005263.2 + 46163 0.69 0.35423
Target:  5'- -cGGuuGCCGGCguCGCCGGUGc--- -3'
miRNA:   3'- cuCCuuUGGCCGguGCGGCCGCuaau -5'
24149 3' -57.4 NC_005263.2 + 30629 0.69 0.35423
Target:  5'- cGAGGAuGCUGcGCCG-GCCGGCG-UUGa -3'
miRNA:   3'- -CUCCUuUGGC-CGGUgCGGCCGCuAAU- -5'
24149 3' -57.4 NC_005263.2 + 1945 0.69 0.371496
Target:  5'- -cGGc-ACCGGCgACGCCGGCa---- -3'
miRNA:   3'- cuCCuuUGGCCGgUGCGGCCGcuaau -5'
24149 3' -57.4 NC_005263.2 + 38196 0.69 0.371496
Target:  5'- cGAGGAAGaaGGCCcgACGCCGcGCGc--- -3'
miRNA:   3'- -CUCCUUUggCCGG--UGCGGC-CGCuaau -5'
24149 3' -57.4 NC_005263.2 + 41148 0.69 0.380341
Target:  5'- -cGGAAACCGGCguuCGCgCGGCGu--- -3'
miRNA:   3'- cuCCUUUGGCCGgu-GCG-GCCGCuaau -5'
24149 3' -57.4 NC_005263.2 + 25883 0.69 0.380341
Target:  5'- ----cAACCgGGCCgACGCCGGCGAc-- -3'
miRNA:   3'- cuccuUUGG-CCGG-UGCGGCCGCUaau -5'
24149 3' -57.4 NC_005263.2 + 6777 0.68 0.398449
Target:  5'- cGAGaucguAAUCGGUgACGCCGGCGGg-- -3'
miRNA:   3'- -CUCcu---UUGGCCGgUGCGGCCGCUaau -5'
24149 3' -57.4 NC_005263.2 + 41772 0.68 0.398449
Target:  5'- cGAGGAGAUCGGCgcgggcgacucgCGCGCCGGacuaugGGUUu -3'
miRNA:   3'- -CUCCUUUGGCCG------------GUGCGGCCg-----CUAAu -5'
24149 3' -57.4 NC_005263.2 + 34346 0.68 0.398449
Target:  5'- aAGaGAAAgccgacacauCCGGCCuggcCGCCGGCGGUa- -3'
miRNA:   3'- cUC-CUUU----------GGCCGGu---GCGGCCGCUAau -5'
24149 3' -57.4 NC_005263.2 + 7844 0.68 0.436276
Target:  5'- -cGGuuGGCCGGCCGCGUCGcGCa---- -3'
miRNA:   3'- cuCCu-UUGGCCGGUGCGGC-CGcuaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.