miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24149 5' -53.3 NC_005263.2 + 45734 0.66 0.815182
Target:  5'- uGCCGCUCGGUgcugaGGGUugGcACGGc---- -3'
miRNA:   3'- -CGGCGAGCCG-----UUCAugC-UGCUcaaga -5'
24149 5' -53.3 NC_005263.2 + 39361 0.66 0.815182
Target:  5'- uUCGCUCGGCG---GCGGCGcGcUUCUa -3'
miRNA:   3'- cGGCGAGCCGUucaUGCUGCuC-AAGA- -5'
24149 5' -53.3 NC_005263.2 + 16558 0.66 0.812321
Target:  5'- cGCCGcCUgGGCAgcgacgccaaggccGGcgGCGACGcGUUCg -3'
miRNA:   3'- -CGGC-GAgCCGU--------------UCa-UGCUGCuCAAGa -5'
24149 5' -53.3 NC_005263.2 + 6393 0.66 0.805575
Target:  5'- uGCCGUagGGUAGGUcacacAgGACGAGaUCg -3'
miRNA:   3'- -CGGCGagCCGUUCA-----UgCUGCUCaAGa -5'
24149 5' -53.3 NC_005263.2 + 47226 0.66 0.79972
Target:  5'- cGCCGCgcugaacgaagcgcCGGCcGGcACGACGGGUa-- -3'
miRNA:   3'- -CGGCGa-------------GCCGuUCaUGCUGCUCAaga -5'
24149 5' -53.3 NC_005263.2 + 14386 0.66 0.796768
Target:  5'- gGCCGCUCGucCGGGUGCGGCagcaugacgcaauuGUUCg -3'
miRNA:   3'- -CGGCGAGCc-GUUCAUGCUGcu------------CAAGa -5'
24149 5' -53.3 NC_005263.2 + 31004 0.66 0.79578
Target:  5'- cGCCagaUCGuGCAgcAGUGCGGCGAGgcgCg -3'
miRNA:   3'- -CGGcg-AGC-CGU--UCAUGCUGCUCaa-Ga -5'
24149 5' -53.3 NC_005263.2 + 11826 0.66 0.783792
Target:  5'- cGUgGCUCGGCGAGgucuacuacgacACGACGcaaggcGUUCg -3'
miRNA:   3'- -CGgCGAGCCGUUCa-----------UGCUGCu-----CAAGa -5'
24149 5' -53.3 NC_005263.2 + 26195 0.66 0.775669
Target:  5'- gGCCGCgCGGCGGccgcgcgaUGCGGCGGccGUUCg -3'
miRNA:   3'- -CGGCGaGCCGUUc-------AUGCUGCU--CAAGa -5'
24149 5' -53.3 NC_005263.2 + 8828 0.66 0.775669
Target:  5'- gGCCGCUCGGC--GUGCGAUc------ -3'
miRNA:   3'- -CGGCGAGCCGuuCAUGCUGcucaaga -5'
24149 5' -53.3 NC_005263.2 + 22490 0.66 0.775669
Target:  5'- uGUCGC-CGGCGGcGgccgGCGGCG-GUUCg -3'
miRNA:   3'- -CGGCGaGCCGUU-Ca---UGCUGCuCAAGa -5'
24149 5' -53.3 NC_005263.2 + 908 0.66 0.766412
Target:  5'- cGCCGC-CGGCGGGUuacucgucgacgcauCGaACGGGUUg- -3'
miRNA:   3'- -CGGCGaGCCGUUCAu--------------GC-UGCUCAAga -5'
24149 5' -53.3 NC_005263.2 + 18466 0.67 0.759132
Target:  5'- aGCCGCgCGGCuGGUACacccuuuggcugcagGGCGAaccGUUCa -3'
miRNA:   3'- -CGGCGaGCCGuUCAUG---------------CUGCU---CAAGa -5'
24149 5' -53.3 NC_005263.2 + 25421 0.67 0.744377
Target:  5'- aGCCaucCUCGGCGcGUGCGguGCgGGGUUCg -3'
miRNA:   3'- -CGGc--GAGCCGUuCAUGC--UG-CUCAAGa -5'
24149 5' -53.3 NC_005263.2 + 3937 0.68 0.701062
Target:  5'- gGCCGaC-CGGCAGGUugG-CGccGUUCUg -3'
miRNA:   3'- -CGGC-GaGCCGUUCAugCuGCu-CAAGA- -5'
24149 5' -53.3 NC_005263.2 + 20165 0.68 0.667802
Target:  5'- cGCCGUcCGGCucaucgACGACGAGcgCg -3'
miRNA:   3'- -CGGCGaGCCGuuca--UGCUGCUCaaGa -5'
24149 5' -53.3 NC_005263.2 + 20117 0.68 0.65663
Target:  5'- cGCCGCgcaggguuaCGGCAAGcGCGACG-GUa-- -3'
miRNA:   3'- -CGGCGa--------GCCGUUCaUGCUGCuCAaga -5'
24149 5' -53.3 NC_005263.2 + 46698 0.68 0.65663
Target:  5'- gGCCG-UCGGCAAGcGCuACGAGUa-- -3'
miRNA:   3'- -CGGCgAGCCGUUCaUGcUGCUCAaga -5'
24149 5' -53.3 NC_005263.2 + 35710 0.69 0.634228
Target:  5'- uGCCgGC-CGGCAAGgucgaagACGGCGAGa--- -3'
miRNA:   3'- -CGG-CGaGCCGUUCa------UGCUGCUCaaga -5'
24149 5' -53.3 NC_005263.2 + 2459 0.69 0.623018
Target:  5'- gGCCaGCUCGGCAAGcaccuCGAgGAGcgCc -3'
miRNA:   3'- -CGG-CGAGCCGUUCau---GCUgCUCaaGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.