miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24151 5' -61.3 NC_005263.2 + 37365 0.66 0.358826
Target:  5'- cCGUGCucgauGC-GCUCGAGUcugcgucgcccugGCUGCGCGa -3'
miRNA:   3'- aGCGCGu----CGaCGGGCUCA-------------UGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 41549 0.66 0.351433
Target:  5'- aCGCGCGGCgcGCCguggcggcgaugCGAGcuuUCGCGCGu -3'
miRNA:   3'- aGCGCGUCGa-CGG------------GCUCau-GGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 3001 0.66 0.351433
Target:  5'- cUCGC-CGGCgcauccGCCgCGAcGUAgCGCGCGa -3'
miRNA:   3'- -AGCGcGUCGa-----CGG-GCU-CAUgGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 37237 0.66 0.351433
Target:  5'- gCGCGCcGgUG-CCGAGUuCCGcCGCGa -3'
miRNA:   3'- aGCGCGuCgACgGGCUCAuGGC-GCGC- -5'
24151 5' -61.3 NC_005263.2 + 44771 0.66 0.351433
Target:  5'- gCGCGCGGCgccggcgGCgCGcAGacguugaacACCGCGCGg -3'
miRNA:   3'- aGCGCGUCGa------CGgGC-UCa--------UGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 37943 0.66 0.348993
Target:  5'- uUCGCGCucucggcgacgccaAGCUGCCCGccucgugggaAGUGCaCGUGa- -3'
miRNA:   3'- -AGCGCG--------------UCGACGGGC----------UCAUG-GCGCgc -5'
24151 5' -61.3 NC_005263.2 + 19673 0.67 0.343347
Target:  5'- aCGcCGC-GCUGCCCGcgacGUucaCGCGCGu -3'
miRNA:   3'- aGC-GCGuCGACGGGCu---CAug-GCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 7192 0.67 0.343347
Target:  5'- -gGCGCAGUaGauaCCGAGU--CGCGCGa -3'
miRNA:   3'- agCGCGUCGaCg--GGCUCAugGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 8854 0.67 0.338559
Target:  5'- gCGCGCAGCUcGgCCGAcgggauacgcggcccGUGCUGC-CGg -3'
miRNA:   3'- aGCGCGUCGA-CgGGCU---------------CAUGGCGcGC- -5'
24151 5' -61.3 NC_005263.2 + 19040 0.67 0.335395
Target:  5'- aUCGCGCcguAGCggGCCgCGucGUgcuauccaagGCCGCGCGu -3'
miRNA:   3'- -AGCGCG---UCGa-CGG-GCu-CA----------UGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 3664 0.67 0.335395
Target:  5'- gUGUGCAGCUcGUUCGAGacagugccgGCCGuCGCGu -3'
miRNA:   3'- aGCGCGUCGA-CGGGCUCa--------UGGC-GCGC- -5'
24151 5' -61.3 NC_005263.2 + 15565 0.67 0.335395
Target:  5'- gCGCGUGGCcgGCCUGccgacAGUcGCCGCGUu -3'
miRNA:   3'- aGCGCGUCGa-CGGGC-----UCA-UGGCGCGc -5'
24151 5' -61.3 NC_005263.2 + 24698 0.67 0.335395
Target:  5'- aCG-GCGGC-GCgCCGAacGUGCCGgGCGg -3'
miRNA:   3'- aGCgCGUCGaCG-GGCU--CAUGGCgCGC- -5'
24151 5' -61.3 NC_005263.2 + 7664 0.67 0.335395
Target:  5'- gCGuUGCGGCcuuUGCCCGucuucaaccgGGUucgagucgGCCGCGCGg -3'
miRNA:   3'- aGC-GCGUCG---ACGGGC----------UCA--------UGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 42970 0.67 0.330689
Target:  5'- aCGgGCGGUUcGCCCGugacggacgacaauGUGuuGCGCGa -3'
miRNA:   3'- aGCgCGUCGA-CGGGCu-------------CAUggCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 33232 0.67 0.327579
Target:  5'- -aGUGCGGcCUGCUCGAGUcgaucgauGuuGCGCc -3'
miRNA:   3'- agCGCGUC-GACGGGCUCA--------UggCGCGc -5'
24151 5' -61.3 NC_005263.2 + 29886 0.67 0.327579
Target:  5'- gUCGCGCGGCcggacaGCgUGuGaUACUGCGCGc -3'
miRNA:   3'- -AGCGCGUCGa-----CGgGCuC-AUGGCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 38547 0.67 0.319898
Target:  5'- gCGCGCcgccuGGCaaGCCgCGAGcGCCGCGuCGg -3'
miRNA:   3'- aGCGCG-----UCGa-CGG-GCUCaUGGCGC-GC- -5'
24151 5' -61.3 NC_005263.2 + 29057 0.67 0.319898
Target:  5'- cCGCGCGGCgcgucCUCGGG-GCgGCGCGc -3'
miRNA:   3'- aGCGCGUCGac---GGGCUCaUGgCGCGC- -5'
24151 5' -61.3 NC_005263.2 + 27945 0.67 0.319898
Target:  5'- -gGUGCAGUagccguagaagUGCCCGGcgcgacggccGUACCGuCGCGc -3'
miRNA:   3'- agCGCGUCG-----------ACGGGCU----------CAUGGC-GCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.